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      Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

      research-article
      , *
      Nucleic Acids Research
      Oxford University Press

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          Abstract

          Interactive Tree Of Life ( http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone. In addition to classical tree viewer functions, iTOL offers many novel ways of annotating trees with various additional data. Current version introduces numerous new features and greatly expands the number of supported data set types. Trees can be interactively manipulated and edited. A free personal account system is available, providing management and sharing of trees in user defined workspaces and projects. Export to various bitmap and vector graphics formats is supported. Batch access interface is available for programmatic access or inclusion of interactive trees into other web services.

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          Most cited references5

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          TreeView: an application to display phylogenetic trees on personal computers.

          R D Page (1996)
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            ATV: display and manipulation of annotated phylogenetic trees.

            A Tree Viewer (ATV) is a Java tool for the display and manipulation of annotated phylogenetic trees. It can be utilized both as a standalone application and as an applet in a web browser.
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              SmashCommunity: a metagenomic annotation and analysis tool.

              SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses. SmashCommunity source code and documentation are available at http://www.bork.embl.de/software/smash bork@embl.de Supplementary data are available at Bioinformatics online.
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                Author and article information

                Journal
                Nucleic Acids Res
                nar
                nar
                Nucleic Acids Research
                Oxford University Press
                0305-1048
                1362-4962
                1 July 2011
                1 July 2011
                5 April 2011
                5 April 2011
                : 39
                : Web Server issue , Web Server issue
                : W475-W478
                Affiliations
                EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany
                Author notes
                *To whom correspondence should be addressed. Tel: +49 6221 387 8526; Fax: +49 6221 387 8517; Email: bork@ 123456embl.de
                Article
                gkr201
                10.1093/nar/gkr201
                3125724
                21470960
                293deb20-1957-4a1b-b989-a9c27c945790
                © The Author(s) 2011. Published by Oxford University Press.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 28 January 2011
                : 23 February 2011
                : 21 March 2011
                Page count
                Pages: 4
                Categories
                Articles

                Genetics
                Genetics

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