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      Machine Learning Algorithms, Applied to Intact Islets of Langerhans, Demonstrate Significantly Enhanced Insulin Staining at the Capillary Interface of Human Pancreatic β Cells

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          Abstract

          Pancreatic β cells secrete the hormone insulin into the bloodstream and are critical in the control of blood glucose concentrations. β cells are clustered in the micro-organs of the islets of Langerhans, which have a rich capillary network. Recent work has highlighted the intimate spatial connections between β cells and these capillaries, which lead to the targeting of insulin secretion to the region where the β cells contact the capillary basement membrane. In addition, β cells orientate with respect to the capillary contact point and many proteins are differentially distributed at the capillary interface compared with the rest of the cell. Here, we set out to develop an automated image analysis approach to identify individual β cells within intact islets and to determine if the distribution of insulin across the cells was polarised. Our results show that a U-Net machine learning algorithm correctly identified β cells and their orientation with respect to the capillaries. Using this information, we then quantified insulin distribution across the β cells to show enrichment at the capillary interface. We conclude that machine learning is a useful analytical tool to interrogate large image datasets and analyse sub-cellular organisation.

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              U-Net: deep learning for cell counting, detection, and morphometry

              U-Net is a generic deep-learning solution for frequently occurring quantification tasks such as cell detection and shape measurements in biomedical image data. We present an ImageJ plugin that enables non-machine-learning experts to analyze their data with U-Net on either a local computer or a remote server/cloud service. The plugin comes with pretrained models for single-cell segmentation and allows for U-Net to be adapted to new tasks on the basis of a few annotated samples.
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Metabolites
                Metabolites
                metabolites
                Metabolites
                MDPI
                2218-1989
                07 June 2021
                June 2021
                : 11
                : 6
                : 363
                Affiliations
                [1 ]Charles Perkins Centre, School of Medical Sciences, University of Sydney, Camperdown 2006, Australia; louise.cottle@ 123456sydney.edu.au (L.C.); kden4987@ 123456uni.sydney.edu.au (K.D.); melkam.kebede@ 123456sydney.edu.au (M.A.K.)
                [2 ]School of Computer Science, University of Sydney, Camperdown 2006, Australia; ian.gilroy@ 123456sydney.edu.au (I.G.); jinman.kim@ 123456sydney.edu.au (J.K.)
                [3 ]St Vincent’s Institute, Fitzroy 3065, Australia; tloudovaris@ 123456svi.edu.au (T.L.); hthomas@ 123456svi.edu.au (H.E.T.)
                [4 ]Department of Medicine, St Vincent’s Hospital, University of Melbourne, Fitzroy 3065, Australia
                [5 ]Northern Clinical School, University of Sydney, St Leonards 2065, Australia; Anthony.Gill@ 123456health.nsw.gov.au (A.J.G.); jas.samra@ 123456bigpond.com (J.S.S.)
                [6 ]Department of Anatomical Pathology, Royal North Shore Hospital, St Leonards 2065, Australia
                [7 ]Cancer Diagnosis and Pathology Research Group, Kolling Institute of Medical Research, St Leonards 2065, Australia
                [8 ]Upper Gastrointestinal Surgical Unit, Royal North Shore Hospital, St Leonards 2065, Australia
                Author notes
                [* ]Correspondence: p.thorn@ 123456sydney.edu.au
                Author information
                https://orcid.org/0000-0002-5278-0251
                https://orcid.org/0000-0001-5227-3092
                https://orcid.org/0000-0002-9096-2574
                https://orcid.org/0000-0001-9686-7378
                Article
                metabolites-11-00363
                10.3390/metabo11060363
                8229564
                34200432
                553c03a5-e54e-4d8f-ab46-0a41d16aab48
                © 2021 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 03 May 2021
                : 28 May 2021
                Categories
                Article

                insulin,beta cell,human,islet,polarisation,machine learning,deep learning,cell segmentation,automation

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