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      Neuroblastoma amplified sequence gene is associated with a novel short stature syndrome characterised by optic nerve atrophy and Pelger–Huët anomaly

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          Abstract

          Background

          Hereditary short stature syndromes are clinically and genetically heterogeneous disorders and the cause have not been fully identified. Yakuts are a population isolated in Asia; they live in the far east of the Russian Federation and have a high prevalence of hereditary short stature syndrome including 3-M syndrome. A novel short stature syndrome in Yakuts is reported here, which is characterised by autosomal recessive inheritance, severe postnatal growth retardation, facial dysmorphism with senile face, small hands and feet, normal intelligence, Pelger-Huët anomaly of leucocytes, and optic atrophy with loss of visual acuity and colour vision. This new syndrome is designated as short stature with optic atrophy and Pelger-Huët anomaly (SOPH) syndrome.

          Aims

          To identify a causative gene for SOPH syndrome.

          Methods

          Genomewide homozygosity mapping was conducted in 33 patients in 30 families.

          Results

          The disease locus was mapped to the 1.1 Mb region on chromosome 2p24.3, including the neuroblastoma amplified sequence (NBAS) gene. Subsequently, 33 of 34 patients were identified with SOPH syndrome and had a 5741G/A nucleotide substitution (resulting in the amino acid substitution R1914H) in the NBAS gene in the homozygous state. None of the 203 normal Yakuts individuals had this substitution in the homozygous state. Immunohistochemical analysis revealed that the NBAS protein is well expressed in retinal ganglion cells, epidermal skin cells, and leucocyte cytoplasm in controls as well as a patient with SOPH syndrome.

          Conclusion

          These findings suggest that function of NBAS may associate with the pathogenesis of short stature syndrome as well as optic atrophy and Pelger-Huët anomaly.

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          Most cited references24

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          Human non-synonymous SNPs: server and survey.

          Human single nucleotide polymorphisms (SNPs) represent the most frequent type of human population DNA variation. One of the main goals of SNP research is to understand the genetics of the human phenotype variation and especially the genetic basis of human complex diseases. Non-synonymous coding SNPs (nsSNPs) comprise a group of SNPs that, together with SNPs in regulatory regions, are believed to have the highest impact on phenotype. Here we present a World Wide Web server to predict the effect of an nsSNP on protein structure and function. The prediction method enabled analysis of the publicly available SNP database HGVbase, which gave rise to a dataset of nsSNPs with predicted functionality. The dataset was further used to compare the effect of various structural and functional characteristics of amino acid substitutions responsible for phenotypic display of nsSNPs. We also studied the dependence of selective pressure on the structural and functional properties of proteins. We found that in our dataset the selection pressure against deleterious SNPs depends on the molecular function of the protein, although it is insensitive to several other protein features considered. The strongest selective pressure was detected for proteins involved in transcription regulation.
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            Genetics of population isolates.

            Genetic isolates, as shown empirically by the Finnish, Old Order Amish, Hutterites, Sardinian and Jewish communities among others, represent a most important and powerful tool in genetically mapping inherited disorders. The main features associated with that genetic power are the existence of multigenerational pedigrees which are mostly descended from a small number of founders a short number of generations ago, environmental and phenotypic homogeneity, restricted geographical distribution, the presence of exhaustive and detailed records correlating individuals in very well ascertained pedigrees, and inbreeding as a norm. On the other hand, the presence of a multifounder effect or admixture among divergent populations in the founder time (e.g. the Finnish and the Paisa community from Colombia) will theoretically result in increased linkage disequilibrium among adjacent loci. The present review evaluates the historical context and features of some genetic isolates with emphasis on the basic population genetic concepts of inbreeding and genetic drift, and also the state-of-the-art in mapping traits, both Mendelian and complex, on genetic isolates.
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              Use of population isolates for mapping complex traits.

              Geneticists have repeatedly turned to population isolates for mapping and cloning Mendelian disease genes. Population isolates possess many advantages in this regard. Foremost among these is the tendency for affected individuals to share ancestral haplotypes derived from a handful of founders. These haplotype signatures have guided scientists in the fine mapping of scores of rare disease genes. The past successes with Mendelian disorders using population isolates have prompted unprecedented interest among medical researchers in both the public and private sectors. Despite the obvious genetic and environmental complications, geneticists have targeted several population isolates for mapping genes for complex diseases.
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                Author and article information

                Journal
                J Med Genet
                jmg
                jmedgenet
                Journal of Medical Genetics
                BMJ Group (BMA House, Tavistock Square, London, WC1H 9JR )
                0022-2593
                1468-6244
                24 June 2010
                August 2010
                24 June 2010
                : 47
                : 8
                : 538-548
                Affiliations
                [1 ]Department of Molecular Genetics, Yakut Scientific Center of Complex Medical Problems, Siberian Department of Russian Academy of Medical Science, Yakutsk, Russia
                [2 ]Department of Neurology, Brain Research Institute, Niigata University, Niigata, Japan
                [3 ]Department of Pathology, Brain Research Institute, Niigata University, Niigata, Japan
                [4 ]Division of Ophthalmology and Visual Science, Graduate School of Medical and Dental Sciences, University of Niigata, Niigata, Japan
                [5 ]Department of Molecular Genetics, Center for Bioresource-based Researches, Brain Research Institute, Niigata University, Japan
                [6 ]Division of Dermatology, Graduate School of Medical and Dental Sciences, University of Niigata, Niigata, Japan
                [7 ]Republican Hospital No. 1 - National Medical Centre, Yakutsk, Russia
                [8 ]Department of Molecular Neuroscience, Center for Bioresource-based Researches, Brain Research Institute, Niigata University, Japan
                Author notes
                Correspondence to Dr Osamu Onodera, Department of Molecular Neuroscience, Resource Branch for Brain Disease, Brain Research Institute, Niigata University, 1-757 Asahimachi, Niigata 951-8520, Japan; onodera@ 123456bri.niigata-u.ac.jp

                NM and KH contributed equally to this work.

                Article
                jmedgenet74815
                10.1136/jmg.2009.074815
                2921285
                20577004
                9c04dc6b-972c-4f3e-921c-8e66bfacfe26
                © 2010, Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

                This is an open-access article distributed under the terms of the Creative Commons Attribution Non-commercial License, which permits use, distribution, and reproduction in any medium, provided the original work is properly cited, the use is non commercial and is otherwise in compliance with the license. See: http://creativecommons.org/licenses/by-nc/2.0/ and http://creativecommons.org/licenses/by-nc/2.0/legalcode.

                History
                : 26 January 2010
                Categories
                Original Article
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                Genetics
                diagnosis,short stature,ophthalmology,pelger-huët anomaly,haematology (incl blood transfusion),yakuts,endocrinology,clinical genetics,optic atrophy,nbas

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