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      The centipede genus Eupolybothrus Verhoeff, 1907 (Chilopoda: Lithobiomorpha: Lithobiidae) in North Africa, a cybertaxonomic revision, with a key to all species in the genus and the first use of DNA barcoding for the group

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          Abstract

          Abstract

          The centipede genus Eupolybothrus Verhoeff, 1907 in North Africa is revised. A new cavernicolous species, Eupolybothrus kahfi Stoev & Akkari, sp. n., is described from a cave in Jebel Zaghouan, northeast Tunisia. Morphologically, it is most closely related to Eupolybothrus nudicornis (Gervais, 1837) from North Africa and Southwest Europe but can be readily distinguished by the long antennae and leg-pair 15, a conical dorso-median protuberance emerging from the posterior part of prefemur 15, and the shape of the male first genital sternite. Molecular sequence data from the cytochrome c oxidase I gene (mtDNA–5’ COI-barcoding fragment) exhibit 19.19% divergence between Eupolybothrus kahfi and Eupolybothrus nudicornis , an interspecific value comparable to those observed among four other species of Eupolybothrus which, combined with a low intraspecific divergence (0.3–1.14%), supports the morphological diagnosis of Eupolybothrus kahfi as a separate species. This is the first troglomorphic myriapod to be found in Tunisia, and the second troglomorph lithobiomorph centipede known from North Africa. Eupolybothrus nudicornis is redescribed based on abundant material from Tunisia and its post-embryonic development, distribution and habitat preferences recorded. Eupolybothrus cloudsley-thompsoni Turk, 1955, a nominal species based on Tunisian type material, is placed in synonymy with Eupolybothrus nudicornis . To comply with the latest technological developments in publishing of biological information, the paper implements new approaches in cybertaxonomy, such as fine granularity XML tagging validated against the NLM DTD TaxPub for PubMedCentral and dissemination in XML to various aggregators (GBIF, EOL, Wikipedia), vizualisation of all taxa mentioned in the text via the dynamically created Pensoft Taxon Profile (PTP) page, data publishing, georeferencing of all localities via Google Earth, and ZooBank, GenBank and MorphBank registration of datasets. An interactive key to all valid species of Eupolybothrus is made with DELTA software.

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          An inexpensive, automation-friendly protocol for recovering high-quality DNA

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            Critical factors for assembling a high volume of DNA barcodes.

            Large-scale DNA barcoding projects are now moving toward activation while the creation of a comprehensive barcode library for eukaryotes will ultimately require the acquisition of some 100 million barcodes. To satisfy this need, analytical facilities must adopt protocols that can support the rapid, cost-effective assembly of barcodes. In this paper we discuss the prospects for establishing high volume DNA barcoding facilities by evaluating key steps in the analytical chain from specimens to barcodes. Alliances with members of the taxonomic community represent the most effective strategy for provisioning the analytical chain with specimens. The optimal protocols for DNA extraction and subsequent PCR amplification of the barcode region depend strongly on their condition, but production targets of 100K barcode records per year are now feasible for facilities working with compliant specimens. The analysis of museum collections is currently challenging, but PCR cocktails that combine polymerases with repair enzyme(s) promise future success. Barcode analysis is already a cost-effective option for species identification in some situations and this will increasingly be the case as reference libraries are assembled and analytical protocols are simplified.
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              Adding mitochondrial sequence data (16S rRNA and cytochrome c oxidase subunit I) to the phylogeny of centipedes (Myriapoda: Chilopoda): an analysis of morphology and four molecular loci

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                Author and article information

                Contributors
                URI : urn:lsid:zoobank.org:author:333ECF33-329C-4BC2-BD6A-8D98F6E340D4
                URI : urn:lsid:zoobank.org:author:8DF67798-8E47-4286-8A79-C3A66B46A10F
                URI : urn:lsid:zoobank.org:author:30E6BE85-C1DA-4215-A07D-652C9770AEC9
                URI : urn:lsid:zoobank.org:author:BD56072E-EA94-4F67-A26C-CC53BA478363
                URI : urn:lsid:zoobank.org:author:9B9D901F-D6C8-4BCA-B11B-CF6EE85B16DC
                URI : urn:lsid:zoobank.org:author:3E3FAAC0-19AF-41AF-B41D-69063B953C89
                URI : urn:lsid:zoobank.org:author:9D70AF99-0129-4669-86B9-1AA38B1CE555
                URI : urn:lsid:zoobank.org:author:1DC4B249-A873-4ACF-AA8F-5FF3AE56803A
                Journal
                Zookeys
                ZooKeys
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2010
                30 June 2010
                : 50
                : 29-77
                Affiliations
                [1 ]National Museum of Natural History, Tsar Osvoboditel Blvd. 1, 1000 Sofia, Bulgaria
                [2 ]Research Unit of Biodiversity and Biology of Populations, Institut Superieur des Sciences Biologiques Appliquees de Tunis, 9 Avenue Dr. Zouheir Essafi, La Rabta, 1007 Tunis, Tunisia
                [3 ]Universita degli Studi della Tuscia, Dipartimento di Protezione delle Piante, via S. Camillo de Lellis s.n.c., I-01100 Viterbo, Italy
                [4 ]Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario N1G 2W1, Canada
                [5 ]Natural History Museum of Denmark (Zoological Museum), University of Copenhagen, Universitetsparken 15, DK-2100 Kobenhavn O - Denmark
                [6 ]The Natural History Museum, Department of Palaeontology, Cromwell Road, London SW7 5BD, UK
                [7 ]Pensoft Publishers, 13a Geo Milev Str., 1111 Sofia, Bulgaria
                [8 ]Bulgarian Academy of Sciences & Pensoft Publishers, 13a Geo Milev Str., Sofia, Bulgaria
                Author notes
                Corresponding author: Pavel Stoev ( pavel.e.stoev@ 123456gmail.com ).

                Academic editor: Robert Mesibov

                Article
                10.3897/zookeys.50.504
                3088018
                21594115
                c99fb78b-f52c-45f1-8276-b6bcb17914d2
                Copyright Pavel Stoev et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 20 May 2010
                : 24 May 2010
                Categories
                Article

                Animal science & Zoology
                troglomorphism,habitat preferences,eupolybothrus nudicornis,cytochrome c oxidase i gene,interactive key,eupolybothrus kahfi sp. n.,semantic tagging,north africa,cybertaxonomy,semantic enhancements,barcoding

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