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PROMO: detection of known transcription regulatory elements using species-tailored searches.

Author(s): Xavier Messeguer, Ruth Escudero, Domènec Farré, Oscar Nuñez, Javier Munoz Martinez, M.Mar Albà

Publication date: 2002-01-31

Keywords: Animals, Binding Sites, genetics, Computational Biology, DNA, metabolism, Humans, Software, Species Specificity, Transcription Factors

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Abstract

We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences.