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      A complex structure of arrestin-2 bound to a G protein-coupled receptor

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          Abstract

          Arrestins comprise a family of signal regulators of G-protein-coupled receptors (GPCRs), which include arrestins 1 to 4. While arrestins 1 and 4 are visual arrestins dedicated to rhodopsin, arrestins 2 and 3 (Arr2 and Arr3) are β-arrestins known to regulate many nonvisual GPCRs. The dynamic and promiscuous coupling of Arr2 to nonvisual GPCRs has posed technical challenges to tackle the basis of arrestin binding to GPCRs. Here we report the structure of Arr2 in complex with neurotensin receptor 1 (NTSR1), which reveals an overall assembly that is strikingly different from the visual arrestin–rhodopsin complex by a 90° rotation of Arr2 relative to the receptor. In this new configuration, intracellular loop 3 (ICL3) and transmembrane helix 6 (TM6) of the receptor are oriented toward the N-terminal domain of the arrestin, making it possible for GPCRs that lack the C-terminal tail to couple Arr2 through their ICL3. Molecular dynamics simulation and crosslinking data further support the assembly of the Arr2‒NTSR1 complex. Sequence analysis and homology modeling suggest that the Arr2‒NTSR1 complex structure may provide an alternative template for modeling arrestin–GPCR interactions.

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          OPM: orientations of proteins in membranes database.

          The Orientations of Proteins in Membranes (OPM) database provides a collection of transmembrane, monotopic and peripheral proteins from the Protein Data Bank whose spatial arrangements in the lipid bilayer have been calculated theoretically and compared with experimental data. The database allows analysis, sorting and searching of membrane proteins based on their structural classification, species, destination membrane, numbers of transmembrane segments and subunits, numbers of secondary structures and the calculated hydrophobic thickness or tilt angle with respect to the bilayer normal. All coordinate files with the calculated membrane boundaries are available for downloading. http://opm.phar.umich.edu.
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            The genetic design of signaling cascades to record receptor activation.

            We have developed an experimental strategy to monitor protein interactions in a cell with a high degree of selectivity and sensitivity. A transcription factor is tethered to a membrane-bound receptor with a linker that contains a cleavage site for a specific protease. Activation of the receptor recruits a signaling protein fused to the protease that then cleaves and releases the transcription factor to activate reporter genes in the nucleus. This strategy converts a transient interaction into a stable and amplifiable reporter gene signal to record the activation of a receptor without interference from endogenous signaling pathways. We have developed this assay for three classes of receptors: G protein-coupled receptors, receptor tyrosine kinases, and steroid hormone receptors. Finally, we use the assay to identify a ligand for the orphan receptor GPR1, suggesting a role for this receptor in the regulation of inflammation.
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              Microscale fluorescent thermal stability assay for membrane proteins.

              Systematic efforts to understand membrane protein stability under a variety of different solution conditions are not widely available for membrane proteins, mainly due to technical problems stemming from the presence of detergents necessary to keep the proteins in the solubilized state and the background that such detergents usually generate during biophysical characterization. In this report, we introduce an efficient microscale fluorescent stability screen using the thiol-specific fluorochrome N-[4-(7-diethylamino-4-methyl-3-coumarinyl)phenyl]maleimide (CPM) for stability profiling of membrane proteins under different solution and ligand conditions. The screen uses the chemical reactivity of the native cysteines embedded in the protein interior as a sensor for the overall integrity of the folded state. The thermal information gained by thorough investigation of the protein stability landscape can be effectively used to guide purification and biophysical characterization efforts including crystallization. To evaluate the method, three different protein families were analyzed, including the Apelin G protein-coupled receptor (APJ).
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                Author and article information

                Contributors
                cong@sibcb.ac.cn
                Edward.Zhou@vai.org
                xkyu@simm.ac.cn
                eric.xu@simm.ac.cn
                Journal
                Cell Res
                Cell Res
                Cell Research
                Nature Publishing Group UK (London )
                1001-0602
                1748-7838
                27 November 2019
                December 2019
                : 29
                : 12
                : 971-983
                Affiliations
                [1 ] ISNI 0000000119573309, GRID grid.9227.e, The CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, , Chinese Academy of Sciences, ; Shanghai, 201203 China
                [2 ] ISNI 0000000119573309, GRID grid.9227.e, Cryo-Electron Microscopy Research Center, Shanghai Institute of Materia Medica, , Chinese Academy of Sciences, ; Shanghai, 201203 China
                [3 ] ISNI 0000000119573309, GRID grid.9227.e, National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, University of Chinese Academy of Sciences, , Chinese Academy of Sciences, ; Shanghai, 200031 China
                [4 ] ISNI 0000 0004 1797 8419, GRID grid.410726.6, University of Chinese Academy of Sciences, ; Beijing, 100049 China
                [5 ] ISNI 0000 0004 0406 2057, GRID grid.251017.0, Center for Cancer and Cell Biology, Program for Structural Biology, , Van Andel Research Institute, ; Grand Rapids, MI 49503 USA
                [6 ] ISNI 0000 0004 6087 8632, GRID grid.502979.0, Department of Biotechnology, School of Life Science and Biotechnology, , Adamas University, ; Kolkata, India
                [7 ] ISNI 0000 0001 0193 3564, GRID grid.19373.3f, Laboratory of Receptor Structure and Signaling, HIT Center for Life Science, , Harbin Institute of Technology, ; Harbin, 150001 China
                [8 ] ISNI 0000 0004 1759 700X, GRID grid.13402.34, Department of Pathology of Sir Run Run Shaw Hospital and Department of Biophysics, , Zhejiang University School of Medicine, ; Hangzhou, 310058 China
                Author information
                http://orcid.org/0000-0002-6889-4907
                http://orcid.org/0000-0002-2816-6243
                http://orcid.org/0000-0001-6922-9768
                http://orcid.org/0000-0001-9131-140X
                http://orcid.org/0000-0003-2189-0244
                http://orcid.org/0000-0001-7006-4737
                http://orcid.org/0000-0002-9125-4027
                Article
                PMC6951264 PMC6951264 6951264 256
                10.1038/s41422-019-0256-2
                6951264
                31776446
                8887bfa8-4488-4b38-9a18-8dc76a9f3fa2
                © IBCB, SIBS, CAS 2019
                History
                : 26 October 2019
                : 3 November 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000057, U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS);
                Award ID: GM127710
                Award Recipient :
                Categories
                Article
                Custom metadata
                © IBCB, SIBS, CAS 2019

                Cryoelectron microscopy,Structural biology
                Cryoelectron microscopy, Structural biology

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