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      Beta2 Adrenergic Receptor ( ADRβ2) Haplotype Pair (2/4) Is Associated with Severe Asthma

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          Abstract

          Background

          β2 adrenergic receptor ( ADRβ2) polymorphisms including ADRβ2+46G>A have been reported to cause adverse outcomes in mild asthmatics. The extent to which ADRβ2 polymorphisms and in particular their haplotypes contribute to severe asthma is unknown.

          Objective

          To determine the association of ADRβ2 polymorphisms and haplotypes with asthma severity.

          Methods

          Caucasians (n = 2979) were genotyped for 11 ADRβ2 polymorphisms. The cohort (mean age 39.6, 60% female) included 2296 non-asthmatics, 386 mild asthmatics, 172 moderate asthmatics and 125 severe asthmatics. Haplotype frequency and haplotype pair for each subject was determined using the PHASE algorithm.

          Results

          The three asthmatic cohorts were comparable in age and gender but were distinguishable from each other in terms of symptoms, spirometry, medication use and health care utilisation (p <0.001). None of the polymorphisms showed a genotypic or allelic association with asthma diagnosis or severity. Nine haplotypes were identified and no association was found with asthma diagnosis or severity per se. Haplotype pair 2/4 was associated with asthma severity (Trend Test, OR 1.42, p = 0.0008) but not with asthma per se. Prevalence of haplotype pair 2/2 appeared to decrease with asthma severity (Trend Test, OR 0.78, p = 0.067). Two new haplotypes were identified, occurring exclusively in asthmatics at a frequency of ≥ 1%. In addition, a positive association between carriage of ADRβ2 +523*C and increased risk of atopy was discovered.

          Conclusions

          ADRβ2 haplotype pair 2/4 is associated with severe asthma and is consistent with findings of poor bronchodilator response in mild asthmatics who are also haplotype 2/4.

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          Most cited references46

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          Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.

          A genome-wide association scan in individuals with Crohn's disease by the Wellcome Trust Case Control Consortium detected strong association at four novel loci. We tested 37 SNPs from these and other loci for association in an independent case-control sample. We obtained replication for the autophagy-inducing IRGM gene on chromosome 5q33.1 (replication P = 6.6 x 10(-4), combined P = 2.1 x 10(-10)) and for nine other loci, including NKX2-3, PTPN2 and gene deserts on chromosomes 1q and 5p13.
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            Pharmacogenomics--drug disposition, drug targets, and side effects.

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              Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease.

              Following recent success in genome-wide association studies, a critical focus of human genetics is to understand how genetic variation at implicated loci influences cellular and disease processes. Crohn's disease (CD) is associated with SNPs around IRGM, but coding-sequence variation has been excluded as a source of this association. We identified a common, 20-kb deletion polymorphism, immediately upstream of IRGM and in perfect linkage disequilibrium (r2 = 1.0) with the most strongly CD-associated SNP, that causes IRGM to segregate in the population with two distinct upstream sequences. The deletion (CD risk) and reference (CD protective) haplotypes of IRGM showed distinct expression patterns. Manipulation of IRGM expression levels modulated cellular autophagy of internalized bacteria, a process implicated in CD. These results suggest that the CD association at IRGM arises from an alteration in IRGM regulation that affects the efficacy of autophagy and identify a common deletion polymorphism as a likely causal variant.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2014
                1 April 2014
                : 9
                : 4
                : e93695
                Affiliations
                [1 ]Molecular Genetics and Inflammation Unit, Lung Institute of Western Australia and Centre for Asthma, Allergy and Respiratory Research, University of Western Australia, Crawley, Nedlands, Western Australia, Australia
                [2 ]School of Medicine and Pharmacology, University of Western Australia, Crawley, Western Australia, Australia
                [3 ]The Queensland Institute of Medical Research, Brisbane, Queensland, Australia
                [4 ]Department of Respiratory Medicine, Royal Perth Hospital, Perth, Western Australia, Australia
                [5 ]Department of Respiratory Medicine, Sir Charles Gairdner Hospital, Nedlands, Western Australia, Australia
                Cincinnati Children's Hospital Medical center, United States of America
                Author notes

                Competing Interests: All authors have declared that no competing interests exist.

                Conceived and designed the experiments: LPC GW PT. Performed the experiments: LPC. Analyzed the data: LPC MF. Contributed reagents/materials/analysis tools: LPC MF SB ST. Wrote the paper: LPC MF GW PT.

                Article
                PONE-D-13-48632
                10.1371/journal.pone.0093695
                3972120
                24691493
                03b7d946-8187-401a-963a-b6abb9ea5190
                Copyright @ 2014

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 20 November 2013
                : 5 March 2014
                Page count
                Pages: 12
                Funding
                The funding for this report was derived from the Lung Institute of Western Australia as part of a PhD project. There were no external sources of funding that would otherwise affect the study design, data collection and analysis, decision to publish or presentation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Genetic Polymorphism
                Genetics
                Human Genetics
                Genetic Association Studies
                Medicine and Health Sciences
                Clinical Genetics
                Personalized Medicine
                Epidemiology
                Genetic Epidemiology
                Pulmonology
                Asthma

                Uncategorized
                Uncategorized

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