14
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: not found
      • Article: not found

      Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome

      , , , , , , ,
      Soil Biology and Biochemistry
      Elsevier BV

      Read this article at

      ScienceOpenPublisher
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Related collections

          Most cited references36

          • Record: found
          • Abstract: found
          • Article: not found

          FLASH: fast length adjustment of short reads to improve genome assemblies.

          Next-generation sequencing technologies generate very large numbers of short reads. Even with very deep genome coverage, short read lengths cause problems in de novo assemblies. The use of paired-end libraries with a fragment size shorter than twice the read length provides an opportunity to generate much longer reads by overlapping and merging read pairs before assembling a genome. We present FLASH, a fast computational tool to extend the length of short reads by overlapping paired-end reads from fragment libraries that are sufficiently short. We tested the correctness of the tool on one million simulated read pairs, and we then applied it as a pre-processor for genome assemblies of Illumina reads from the bacterium Staphylococcus aureus and human chromosome 14. FLASH correctly extended and merged reads >99% of the time on simulated reads with an error rate of <1%. With adequately set parameters, FLASH correctly merged reads over 90% of the time even when the reads contained up to 5% errors. When FLASH was used to extend reads prior to assembly, the resulting assemblies had substantially greater N50 lengths for both contigs and scaffolds. The FLASH system is implemented in C and is freely available as open-source code at http://www.cbcb.umd.edu/software/flash. t.magoc@gmail.com.
            Bookmark
            • Record: found
            • Abstract: not found
            • Article: not found

            Structure and function of the soil microbial community in a long-term fertilizer experiment

              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

                Bookmark

                Author and article information

                Journal
                Soil Biology and Biochemistry
                Soil Biology and Biochemistry
                Elsevier BV
                00380717
                November 2017
                November 2017
                : 114
                :
                : 238-247
                Article
                10.1016/j.soilbio.2017.07.016
                0487aeec-3cfc-4e1f-bf34-70bb71784ddc
                © 2017
                History

                Comments

                Comment on this article