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      Genetic diversity and transmission patterns of Echinococcus granulosus sensu stricto among domestic ungulates of Sardinia, Italy

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          Abstract

          Cystic echinococcosis (CE), a parasitic zoonosis of public health and economic concern, is highly endemic in Sardinia, Italy. The study involved examining the intraspecific variability and demographic structure of Echinococcus granulosus sensu stricto ( s.s.) in common hosts of this parasite. Molecular surveillance included the fragment amplification of a partial mitochondrial gene, cox1 (750 bp), for a total of 69 isolates derived from sheep ( n = 52), cattle ( n = 11), pigs ( n = 4), and goats ( n = 2). It was ascertained that E. granulosus s.s. was the primary agent of infection among these ungulates and G1 genotype was highly prevalent (79.71%). Considerable intraspecific variation was found, revealing the existence of 22 haplotypes with relatively high haplotype (0.8555 ± 0.033) and low nucleotide diversities (0.00281 ± 0.00030). Population demographics indicated an expanding parasitic population signifying negative deviation from neutrality indices. Little genetic differentiation was found between the subpopulations of E. granulosus s.s. in the island. Moreover, the geographic dispersal of genotypes G1 and G3 also indicated similarity between Sardinian and mainland Echinococcus granulosus s.s. populations reaffirming the sympatric occurrence and efficient transmission of G1 and G3 genotypes. Molecular survey of CE has the potential to yield baseline information on the infective genotypes among the intermediate hosts and helps in devising suitable control strategies for curtailing the disease.

          Supplementary Information

          The online version contains supplementary material available at 10.1007/s00436-021-07186-9.

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Clustal W and Clustal X version 2.0.

            The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C++. This will facilitate the further development of the alignment algorithms in the future and has allowed proper porting of the programs to the latest versions of Linux, Macintosh and Windows operating systems. The programs can be run on-line from the EBI web server: http://www.ebi.ac.uk/tools/clustalw2. The source code and executables for Windows, Linux and Macintosh computers are available from the EBI ftp site ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
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              Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.

              We present here a new version of the Arlequin program available under three different forms: a Windows graphical version (Winarl35), a console version of Arlequin (arlecore), and a specific console version to compute summary statistics (arlsumstat). The command-line versions run under both Linux and Windows. The main innovations of the new version include enhanced outputs in XML format, the possibility to embed graphics displaying computation results directly into output files, and the implementation of a new method to detect loci under selection from genome scans. Command-line versions are designed to handle large series of files, and arlsumstat can be used to generate summary statistics from simulated data sets within an Approximate Bayesian Computation framework. © 2010 Blackwell Publishing Ltd.
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                Author and article information

                Contributors
                naunain.mahmood@uos.edu.pk
                giorgia.dessi87@tiscali.it
                fahad.ahmad@studenti.uniss.it
                gaelle.joanny@studenti.uniss.it
                cltamponi@uniss.it
                mgcappai@uniss.it
                varcasia@uniss.it
                scala@uniss.it
                Journal
                Parasitol Res
                Parasitol Res
                Parasitology Research
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0932-0113
                1432-1955
                19 June 2021
                19 June 2021
                2021
                : 120
                : 7
                : 2533-2542
                Affiliations
                [1 ]GRID grid.412782.a, ISNI 0000 0004 0609 4693, Department of Zoology, , University of Sargodha, ; Sargodha, Pakistan
                [2 ]GRID grid.11450.31, ISNI 0000 0001 2097 9138, Dipartimento Di Medicina Veterinaria, , Università Degli Studi Di Sassari, ; Via Vienna, 2, 07100 Sassari, Italy
                Author notes

                Section Editor: Bruno Gottstein

                Author information
                http://orcid.org/0000-0001-6306-9978
                Article
                7186
                10.1007/s00436-021-07186-9
                8263412
                34146127
                05c50dd9-0abb-4f0f-b321-43d423967310
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 15 November 2020
                : 5 May 2021
                Funding
                Funded by: Università degli Studi di Sassari
                Categories
                Helminthology - Original Paper
                Custom metadata
                © Springer-Verlag GmbH Germany, part of Springer Nature 2021

                Parasitology
                cystic echinococcosis,echinococcus granulosus s.s.,genetic diversity,haplotypes,sardinia

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