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      RNA surveillance via nonsense-mediated mRNA decay is crucial for longevity in daf-2/insulin/IGF-1 mutant C. elegans

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          Abstract

          Long-lived organisms often feature more stringent protein and DNA quality control. However, whether RNA quality control mechanisms, such as nonsense-mediated mRNA decay (NMD), which degrades both abnormal as well as some normal transcripts, have a role in organismal aging remains unexplored. Here we show that NMD mediates longevity in C. elegans strains with mutations in daf-2/insulin/insulin-like growth factor 1 receptor. We find that daf-2 mutants display enhanced NMD activity and reduced levels of potentially aberrant transcripts. NMD components, including smg-2/UPF1, are required to achieve the longevity of several long-lived mutants, including daf-2 mutant worms. NMD in the nervous system of the animals is particularly important for RNA quality control to promote longevity. Furthermore, we find that downregulation of yars-2/tyrosyl-tRNA synthetase, an NMD target transcript, by daf-2 mutations contributes to longevity. We propose that NMD-mediated RNA surveillance is a crucial quality control process that contributes to longevity conferred by daf-2 mutations.

          Abstract

          The decline of DNA and protein quality control contributes to organismal ageing. Here, Son et al. report that nonsense-mediated mRNA decay, a RNA quality control mechanism, is enhanced in long-lived daf-2 mutant worms and contributes to their longevity by regulating expression of the yars-2/tyrosyl tRNA synthetase.

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          Most cited references40

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          Improving RNA-Seq expression estimates by correcting for fragment bias

          The biochemistry of RNA-Seq library preparation results in cDNA fragments that are not uniformly distributed within the transcripts they represent. This non-uniformity must be accounted for when estimating expression levels, and we show how to perform the needed corrections using a likelihood based approach. We find improvements in expression estimates as measured by correlation with independently performed qRT-PCR and show that correction of bias leads to improved replicability of results across libraries and sequencing technologies.
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            Signals from the reproductive system regulate the lifespan of C. elegans.

            Understanding how the ageing process is regulated is a fascinating and fundamental problem in biology. Here we demonstrate that signals from the reproductive system influence the lifespan of the nematode Caenorhabditis elegans. If the cells that give rise to the germ line are killed with a laser microbeam, the lifespan of the animal is extended. Our findings suggest that germline signals act by modulating the activity of an insulin/IGF-1 (insulin-like growth factor) pathway that is known to regulate the ageing of this organism. Mutants with reduced activity of the insulin/IGF-1-receptor homologue DAF-2 have been shown to live twice as long as normal, and their longevity requires the activity of DAF- 16, a member of the forkhead/winged-helix family of transcriptional regulators. We find that, in order for germline ablation to extend lifespan, DAF-16 is required, as well as a putative nuclear hormone receptor, DAF-12. In addition, our findings suggest that signals from the somatic gonad also influence ageing, and that this effect requires DAF-2 activity. Together, our findings imply that the C. elegans insulin/IGF-1 system integrates multiple signals to define the animal's rate of ageing. This study demonstrates an inherent relationship between the reproductive state of this animal and its lifespan, and may have implications for the co-evolution of reproductive capability and longevity.
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              A systematic RNAi screen identifies a critical role for mitochondria in C. elegans longevity.

              We report a systematic RNA interference (RNAi) screen of 5,690 Caenorhabditis elegans genes for gene inactivations that increase lifespan. We found that genes important for mitochondrial function stand out as a principal group of genes affecting C. elegans lifespan. A classical genetic screen identified a mutation in the mitochondrial leucyl-tRNA synthetase gene (lrs-2) that impaired mitochondrial function and was associated with longer-lifespan. The long-lived worms with impaired mitochondria had lower ATP content and oxygen consumption, but differential responses to free-radical and other stresses. These data suggest that the longer lifespan of C. elegans with compromised mitochrondria cannot simply be assigned to lower free radical production and suggest a more complex coupling of metabolism and longevity.
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                Author and article information

                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group
                2041-1723
                09 March 2017
                2017
                : 8
                : 14749
                Affiliations
                [1 ]Department of Life Sciences, Pohang University of Science and Technology , Pohang, Gyeongbuk 37673, South Korea
                [2 ]School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology , Pohang, Gyeongbuk 37673, South Korea
                [3 ]Center for Plant Aging Research, Institute for Basic Science , Daegu 42988, South Korea
                [4 ]Information Technology Convergence Engineering, Pohang University of Science and Technology , Pohang, Gyeongbuk 37673, South Korea
                [5 ]Department of Molecular Biology & LSI Genomics, Princeton University , Princeton, New Jersey 08544, USA
                [6 ]Research Division, Korea Brain Research Institute , Daegu 41068, South Korea
                [7 ]Creative Research Initiatives Center for Molecular Biology of Translation, Korea University , Seoul 02841, South Korea
                [8 ]Division of Life Sciences, Korea University , Seoul 02841, South Korea
                [9 ]Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology , Pohang, Gyeongbuk 37673, South Korea
                [10 ]Department of New Biology, DGIST , Daegu 42988, South Korea
                Author notes
                [*]

                These authors contributed equally to this work

                Author information
                http://orcid.org/0000-0001-5833-0844
                Article
                ncomms14749
                10.1038/ncomms14749
                5347137
                28276441
                06364e9a-6ec9-4343-a365-220535e224af
                Copyright © 2017, The Author(s)

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 25 January 2016
                : 30 January 2017
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