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      Revision of sinistral land snails of the genus Camaena (Stylommatophora, Camaenidae) from China based on morphological and molecular data, with description of a new species from Guangxi, China

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          Abstract

          Abstract

          The camaenid land snail genus Camaena is widely distributed throughout Southeast Asia. Thirteen species are found in China alone. Among these, Camaena cicatricosa (Müller, 1774) is the most widely distributed species, including four subspecies, Camaena cicatricosa ducalis (Ancey, 1885), Camaena cicatricosa inflata (Möllendorff, 1885), Camaena cicatricosa obtecta (Fischer, 1898) and Camaena cicatricosa connectens (Dautzenberg & Fischer, 1906). The systematics of these taxa is revised herein based on comparative shell morphology and anatomy as well as analyses of DNA sequences of two mitochondrial genes (COI, 16S rRNA) and one nuclear marker, ITS2. We found that all subspecies form well-supported clades in a molecular phylogeny and are well-differentiated from each other by genetic distances that are consistent with amounts of interspecific differentiation. In addition, they clearly differ from each other in reproductive features. Based on these observations, we elevate all four subspecies to the rank of full species. Moreover, based on morphological and mitochdondrial differentiation, we describe a new species, Camaena poyuensis sp. n. from Guangxi, China. The new species conspicuously differs from its sibling species Camaena cicatricosa in having a larger and more depressed shell, a completely covered umbilicus, more or less purplish peristome, an obtuse angle at the junction of the basal and columellar lip, longer pedunculus of the bursa copulatrix, thicker epiphallus and penis, and short conic verge. Previous named species are also redescribed on their shell and anatomical characters, because the original descriptions are uninformative.

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          Profile hidden Markov models.

          S. Eddy (1998)
          The recent literature on profile hidden Markov model (profile HMM) methods and software is reviewed. Profile HMMs turn a multiple sequence alignment into a position-specific scoring system suitable for searching databases for remotely homologous sequences. Profile HMM analyses complement standard pairwise comparison methods for large-scale sequence analysis. Several software implementations and two large libraries of profile HMMs of common protein domains are available. HMM methods performed comparably to threading methods in the CASP2 structure prediction exercise.
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            An index of substitution saturation and its application.

            We introduce a new index to measure substitution saturation in a set of aligned nucleotide sequences. The index is based on the notion of entropy in information theory. We derive the critical values of the index based on computer simulation with different sequence lengths, different number of OTUs and different topologies. The critical value enables researchers to quickly judge whether a set of aligned sequences is useful in phylogenetics. We illustrate the index by applying it to an analysis of the aligned sequences of the elongation factor-1alpha gene originally used to resolve the deep phylogeny of major arthropod groups. The method has been implemented in DAMBE.
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              Assessing substitution saturation with DAMBE

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                Author and article information

                Journal
                Zookeys
                Zookeys
                ZooKeys
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2016
                25 April 2016
                : 584
                : 25-48
                Affiliations
                [1 ]College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
                [2 ]Key Laboratory of Molluscan Quarantine and Identification of AQSIQ, Fujian Entry-Exit Inspection & Quarantine Bureau, Fuzhou, Fujian 350001, China
                [3 ]Zhejiang Museum of Natural History, Hangzhou, Zhejiang, 310014, China
                [4 ]Department of Life Sciences, National University of Kaohsiung, No.700, Kaohsiung University Road, Nan-Tzu District, Kaohsiung 81148, Taiwan
                Author notes
                Corresponding authors: Wei-Chuan Zhou ( wczhou@ 123456163.com ); Chung-Chi Hwang ( cchwang@ 123456nuk.edu.tw ); Hong-Mu Ai ( aihongmu@ 123456yahoo.com.cn )

                Academic editor: F. Köhler

                Article
                10.3897/zookeys.584.7173
                4857021
                27199593
                09aaec18-5077-482f-8002-557515b286d8
                Hong-Li Ding, Pei Wang, Zhou-Xing Qian, Jun-Hong Lin, Wei-Chuan Zhou, Chung-Chi Hwang, Hong-Mu Ai

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 12 November 2015
                : 25 March 2016
                Categories
                Research Article

                Animal science & Zoology
                land snail,gastropoda,camaenid,taxonomy,anatomy,molecular phylogeny,animalia,stylommatophora,camaenidae

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