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      Circular genome visualization and exploration using CGView.

      Bioinformatics

      User-Computer Interface, Software, methods, Sequence Analysis, DNA, Programming Languages, Information Storage and Retrieval, Database Management Systems, Computer Graphics, Chromosome Mapping

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          Abstract

          CGView (Circular Genome Viewer) is a Java application and library for generating high-quality, zoomable maps of circular genomes. It converts XML or tab-delimited input into a graphical map (PNG, JPG or Scalable Vector Graphics format), complete with sequence features, labels, legends and footnotes. In addition to the default full view map, the program can generate a series of hyperlinked maps showing expanded views. The linked maps can be explored using any Web browser, allowing rapid genome browsing and facilitating data sharing. CGView (the standalone application, library or applet), sample input, sample maps and documentation can be obtained from http://wishart.biology.ualberta.ca/cgview/ david.wishart@ualberta.ca.

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          Author and article information

          Journal
          15479716
          10.1093/bioinformatics/bti054

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