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      GRB10 and E2F3 as Diagnostic Markers of Osteoarthritis and Their Correlation with Immune Infiltration

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          Abstract

          This study aimed to find potential diagnostic markers for osteoarthritis (OA) and analyze the role of immune cells infiltration in this pathology. We used OA datasets from the Gene Expression Omnibus database. First, R software was used to identify differentially expressed genes (DEGs) and perform functional correlation analysis. Then least absolute shrinkage and selection operator (LASSO) logistic regression and support vector machine-recursive feature elimination algorithms were used to screen and verify the diagnostic markers of OA. Finally, CIBERSORT was used to evaluate the infiltration of immune cells in OA tissues, and the correlation between diagnostic markers and infiltrating immune cells was analyzed. A total of 458 DEGs were screened in this study. GRB10 and E2F3 (AUC = 0.962) were identified as diagnostic markers of OA. Immune cell infiltration analysis found that resting mast cells, T regulatory cells, CD4 memory resting T cells, activated NK cells, and eosinophils may be involved in the OA process. In addition, GRB10 was correlated with NK resting cells, naive CD4 + T cells, and M1 macrophages, while E2F3 was correlated with resting mast cells. In conclusion, GRB10 and E2F3 can be used as diagnostic markers of osteoarthritis, and immune cell infiltration plays an important role in the occurrence and progression of OA.

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          Most cited references32

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          Risk factors and burden of osteoarthritis.

          Osteoarthritis (OA) is one of the most common joint disorders worldwide. Its prevalence is increasing because of the growing aging of the population in developed and developing countries as well as an increase in risk factors leading to OA, particularly obesity and a sedentary lifestyle. Risk factors of OA can be divided into person-level factors (age, gender, obesity, genetics and diet) and joint-level factors (injury, malalignment and abnormal loading of the joints) that interact in a complex manner. OA is the 11th cause of disability in the world. It is responsible for activity limitations, particularly walking, and affects participation and quality of life. Patients with OA are at greater risk of all-cause mortality, particularly for cardiovascular diseases, than the general population. This excess mortality is closely associated with disability level. Consequently, strategies to reduce burden through primary and secondary prevention programs are increasingly important.
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              Synovial macrophage M1 polarisation exacerbates experimental osteoarthritis partially through R-spondin-2

              To investigate the roles and regulatory mechanisms of synovial macrophages and their polarisation in the development of osteoarthritis (OA).
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                Author and article information

                Journal
                Diagnostics (Basel)
                Diagnostics (Basel)
                diagnostics
                Diagnostics
                MDPI
                2075-4418
                22 March 2020
                March 2020
                : 10
                : 3
                : 171
                Affiliations
                Key Laboratory of Orthopaedics Disease of Gansu Province, Lanzhou University, Lanzhou 730000, China; dengyajun205@ 123456163.com (Y.-J.D.); reneh17@ 123456lzu.edu.cn (E.-H.R.); yuanwh17@ 123456lzu.edu.cn (W.-H.Y.); zhanggzh18@ 123456lzu.edu.cn (G.-Z.Z.); wuzl18@ 123456lzu.edu.cn (Z.-L.W.)
                Author notes
                [* ]Correspondence: jieqq16@ 123456lzu.edu.cn ; Tel.: +86-15719612948
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-0953-6525
                https://orcid.org/0000-0001-9303-5832
                https://orcid.org/0000-0003-3193-0297
                https://orcid.org/0000-0002-8924-7311
                https://orcid.org/0000-0003-4099-5287
                Article
                diagnostics-10-00171
                10.3390/diagnostics10030171
                7151213
                32235747
                0ec6dd97-882e-4289-9e83-1c1c5d0a624e
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 29 February 2020
                : 19 March 2020
                Categories
                Article

                osteoarthritis,immune cells,diagnostic,gene expression omnibus,cibersort

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