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      Cortinarius subsalor and C. tibeticisalor spp. nov., two new species from the section Delibuti from China

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          Abstract

          Cortinarius subsalor and C. tibeticisalor, belonging to the section Delibuti, are described from China as new to science. Cortinarius subsalor has been found to be associated with Lithocarpus trees in subtropical China and resembling C. salor, but it differs from the later by having slender basidiomata and the narrower basidiospores. Cortinarius tibeticisalor was collected from eastern Tibetan Plateau, associated with Abies. It differs from other species within sect. Delibuti by having olive tinge of mature or dried basidiomata and bigger basidiospores. The molecular data also support C. subsalor and C. tibeticisalor as new species. The phylogenetic analyses and biogeography of sect. Delibuti are discussed and a key to the species of this section currently known in the world is provided.

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

            Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace. RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analyses of large datasets under maximum likelihood. Since the last RAxML paper in 2006, it has been continuously maintained and extended to accommodate the increasingly growing input datasets and to serve the needs of the user community. Results: I present some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees. In addition, an up-to-date 50-page user manual covering all new RAxML options is available. Availability and implementation: The code is available under GNU GPL at https://github.com/stamatak/standard-RAxML. Contact: alexandros.stamatakis@h-its.org Supplementary information: Supplementary data are available at Bioinformatics online.
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              MrBayes 3: Bayesian phylogenetic inference under mixed models.

              MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ Inc. (San Diego, USA )
                2167-8359
                20 September 2021
                2021
                : 9
                : e11982
                Affiliations
                [1 ]Life Science College, Northeast Normal University , Changchun, Jilin, China
                [2 ]Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University , Changchun, Jilin, China
                [3 ]Science and Technology Research Center of Edible Fungi , Lishui, Zhejiang, China
                [4 ]Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University , Budapest, Hungary
                [5 ]State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences , Beijing, China
                Author information
                http://orcid.org/0000-0002-7798-7048
                http://orcid.org/0000-0002-1033-937X
                Article
                11982
                10.7717/peerj.11982
                8459733
                0f200382-ca25-4f0c-ab77-5196e98a40ee
                © 2021 Xie et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 20 May 2021
                : 26 July 2021
                Funding
                Funded by: China Agriculture Research System
                Award ID: CARS20
                Funded by: Overseas Expertise Introduction Project for Discipline Innovation
                Award ID: D17014
                Funded by: National Natural Science Foundation of China
                Award ID: 31270072
                Funded by: Special Funds for the Young Scholars of Taxonomy of the Chinese Academy of Sciences
                Award ID: ZSBR-001
                Funded by: National Key Research and Development Program of China
                Award ID: 2019YFC1604703
                Funded by: ELTE Thematic Excellence Program 2020
                Award ID: TKP2020-IKA-05
                Funded by: National Research, Development and Innovation Office
                This study was supported by the China Agriculture Research System (No. CARS20), Overseas Expertise Introduction Project for Discipline Innovation (No. D17014), National Natural Science Foundation of China (No. 31270072), the Special Funds for the Young Scholars of Taxonomy of the Chinese Academy of Sciences (No. ZSBR-001), the National Key Research and Development program of China (No. 2019YFC1604703). The work of Bálint Dima was supported by the ELTE Thematic Excellence Program 2020 (TKP2020-IKA-05) financed by the National Research, Development and Innovation Office. There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Biodiversity
                Molecular Biology
                Mycology
                Taxonomy

                agaricales,biogeography,its,myxacium,new taxon,phylogeny,taxonomy
                agaricales, biogeography, its, myxacium, new taxon, phylogeny, taxonomy

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