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      Redefining the Australian Anthrax Belt: Modeling the Ecological Niche and Predicting the Geographic Distribution of Bacillus anthracis

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          Abstract

          The ecology and distribution of B. anthracis in Australia is not well understood, despite the continued occurrence of anthrax outbreaks in the eastern states of the country. Efforts to estimate the spatial extent of the risk of disease have been limited to a qualitative definition of an anthrax belt extending from southeast Queensland through the centre of New South Wales and into northern Victoria. This definition of the anthrax belt does not consider the role of environmental conditions in the distribution of B. anthracis. Here, we used the genetic algorithm for rule-set prediction model system (GARP), historical anthrax outbreaks and environmental data to model the ecological niche of B. anthracis and predict its potential geographic distribution in Australia. Our models reveal the niche of B. anthracis in Australia is characterized by a narrow range of ecological conditions concentrated in two disjunct corridors. The most dominant corridor, used to redefine a new anthrax belt, parallels the Eastern Highlands and runs from north Victoria to central east Queensland through the centre of New South Wales. This study has redefined the anthrax belt in eastern Australia and provides insights about the ecological factors that limit the distribution of B. anthracis at the continental scale for Australia. The geographic distributions identified can help inform anthrax surveillance strategies by public and veterinary health agencies.

          Author Summary

          This study explores the spatial ecology of Bacillus anthracis, the causative agent of anthrax disease, in Australia. Globally, anthrax is a neglected zoonotic disease that primarily affect herbivores and incidentally humans and all warm-blooded animals. Here, we used historic anthrax outbreaks for the period 1996–2013 and environmental factors in an ecological niche modelling framework to quantitatively define the ecological niche of B. anthracis using a genetic algorithm. This was projected onto the continental landscape of Australia to predict the geographic distribution of the pathogen. The ecological niche of B. anthracis is characterized by a narrow range of ecological conditions, which are geographically concentrated in two disjunct corridors: a dominant corridor paralleling the Eastern Highlands runs from north Victoria to central east Queensland through the centre of New South Wales, while another corridor was predicted in the southwest of Western Australia. These findings provide an estimate of the potential geographic distribution of B. anthracis, and can help inform anthrax disease surveillance across Australia.

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          Applications of ecological niche modeling for species delimitation: a review and empirical evaluation using day geckos (Phelsuma) from Madagascar.

          Although the systematic utility of ecological niche modeling is generally well known (e.g., concerning the recognition and discovery of areas of endemism for biogeographic analyses), there has been little discussion of applications concerning species delimitation, and to date, no empirical evaluation has been conducted. However, ecological niche modeling can provide compelling evidence for allopatry between populations, and can also detect divergent ecological niches between candidate species. Here we present results for two taxonomically problematic groups of Phelsuma day geckos from Madagascar, where we integrate ecological niche modeling with mitochondrial DNA and morphological data to evaluate species limits. Despite relatively modest levels of genetic and morphological divergence, for both species groups we find divergent ecological niches between closely related species and parapatric ecological niche models. Niche models based on the new species limits provide a better fit to the known distribution than models based upon the combined (lumped) species limits. Based on these results, we elevate three subspecies of Phelsuma madagascariensis to species rank and describe a new species of Phelsuma from the P. dubia species group. Our phylogeny continues to support a major endemic radiation of Phelsuma in Madagascar, with dispersals to Pemba Island and the Mascarene Islands. We conclude that ecological niche modeling offers great potential for species delimitation, especially for taxonomic groups exhibiting low vagility and localized endemism and for groups with more poorly known distributions. In particular, niche modeling should be especially sensitive for detecting recent parapatric speciation driven by ecological divergence, when the environmental gradients driving speciation are represented within the ecological niche models.
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            The ecology of Bacillus anthracis.

            The global distribution of anthrax is largely determined by soils with high calcium levels and a pH above 6.1, which foster spore survival. It is speculated that the spore exosporium probably plays a key part by restricting dispersal and thereby increasing the probability of a grazing animal acquiring a lethal dose. 'Anthrax Seasons' are characterized by hot-dry weather which stresses animals and reduces their innate resistance to infection allowing low doses of spores to be infective. Necrophagic flies act as case-multipliers and haemophagic flies as space-multipliers; the latter are aided by climatic factors which play a key part in whether epidemics occur. Host death is a function of species sensitivity to the toxins. The major function of scavengers is to open the carcass, spill fluids, and thereby aid bacilli dispersal and initiate sporulation. In the context of landscape ecology viable spore distribution is a function of mean annual temperature, annual precipitation, elevation, mean NDVI, annual NDVI amplitude, soil moisture content, and soil pH.
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              Global environmental data for mapping infectious disease distribution.

              This contribution documents the satellite data archives, data processing methods and temporal Fourier analysis (TFA) techniques used to create the remotely sensed datasets on the DVD distributed with this volume. The aim is to provide a detailed reference guide to the genesis of the data, rather than a standard review. These remotely sensed data cover the entire globe at either 1 x 1 or 8 x 8 km spatial resolution. We briefly evaluate the relationships between the 1 x 1 and 8 x 8 km global TFA products to explore their inter-compatibility. The 8 x 8 km TFA surfaces are used in the mapping procedures detailed in the subsequent disease mapping reviews, since the 1 x 1 km products have been validated less widely. Details are also provided on additional, current and planned sensors that should be able to provide continuity with these environmental variable surfaces, as well as other sources of global data that may be used for mapping infectious disease.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                9 June 2016
                June 2016
                : 10
                : 6
                : e0004689
                Affiliations
                [1 ]Spatial Epidemiology and Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, Florida, United States of America
                [2 ]Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America
                [3 ]AgriBio, Centre for Agribiosciences, Biosciences Research, Department of Economic Development, Jobs, Transport and Resources, Bundoora Victoria, Australia
                [4 ]New South Wales Department of Primary Industries, Biosecurity Intelligence and Traceability, Orange New South Wales, Australia
                [5 ]Chief Veterinary Officer's Unit, Department of Economic Development, Jobs, Transport and Resources, Attwood Victoria, Australia
                University of Tennessee, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Conceived and designed the experiments: ASB JKB MF. Performed the experiments: ASB JKB. Analyzed the data: ASB MF JKB. Contributed reagents/materials/analysis tools: MF ASB KP BM SW JM JKB. Wrote the paper: ASB JKB MF.

                Article
                PNTD-D-15-02034
                10.1371/journal.pntd.0004689
                4900651
                27280981
                0f769676-256d-4934-9c19-99080aa0ec15
                © 2016 Barro et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 9 December 2015
                : 14 April 2016
                Page count
                Figures: 5, Tables: 4, Pages: 16
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100008430, Department of Environment and Primary Industries;
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100008430, Department of Environment and Primary Industries;
                Award Recipient :
                The authors received no specific funding for this work.
                Categories
                Research Article
                Medicine and Health Sciences
                Infectious Diseases
                Bacterial Diseases
                Anthrax
                Medicine and Health Sciences
                Infectious Diseases
                Zoonoses
                Anthrax
                Biology and Life Sciences
                Organisms
                Bacteria
                Bacillus
                Bacillus Anthracis
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Bacterial Pathogens
                Bacillus
                Bacillus Anthracis
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
                Microbial Pathogens
                Bacterial Pathogens
                Bacillus
                Bacillus Anthracis
                People and Places
                Geographical Locations
                Oceania
                Australia
                Biology and Life Sciences
                Ecology
                Ecological Niches
                Ecology and Environmental Sciences
                Ecology
                Ecological Niches
                Biology and Life Sciences
                Veterinary Science
                Veterinary Diseases
                Biology and Life Sciences
                Population Biology
                Population Dynamics
                Geographic Distribution
                Biology and Life Sciences
                Agriculture
                Livestock
                Biology and Life Sciences
                Agriculture
                Farms
                Custom metadata
                Data on the location of anthrax outbreaks is considered sensitive information by the Australian government. For access to data, interested parties much contact: AgriBio, Centre for Agribiosciences, Biosciences Research, Department of Economic Development, Jobs, Transport and Resources, 5 Ring Road, Bundoora Victoria 3083, Australia, Jennifer Sutton: jennifer.sutton@ 123456ecodev.vic.gov.au ; New South Wales Department of Primary Industries, Biosecurity Intelligence & Traceability, Orange New South Wales, 2800, Australia: nsw.agriculture@ 123456dpi.nsw.gov.au . All historic data in the paper, prior to 1997 are available in the references provided within the manuscript. Data on recent outbreaks must be requested from appropriate authorities, listed above.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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