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      Ophiotaenia echidis n. sp. (Cestoda: Proteocephalidae) from the saw-scaled viper, Echis carinatus sochureki Stemmler (Ophidia: Viperidae), one of the world's deadliest snakes, from the United Arab Emirates

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          Abstract

          Ophiotaenia echidis n. sp. (Cestoda: Proteocephalidae) is described from the intestine of one of the world's deadliest snakes, the saw-scaled viper Echis carinatus sochureki Stemmler (Ophidia: Viperidae) in the United Arab Emirates. The new species differs from other species of the non-monophyletic Ophiotaenia by the position of testes in two longitudinal lines on both sides of the uterus, and by the large size of an embryophore (diameter of 44–55 μm versus less than 40 μm in other species). Phylogenetic reconstructions based on lsrDNA and concatenated lsrDNA + COI datasets place the new species among proteocephalids from unrelated zoogeographical realms but mostly infecting venomous snakes. In all analyses, O. echidis n. sp. exhibited a strongly supported sister relationship with O. lapata Rambeloson, Ranaivoson et de Chambrier, 2012, a parasite of a pseudoxyrhophiid snake endemic to Madagascar. Despite a shared close evolutionary history between these taxa, morphological synapomorphies remain unclear, which impedes the erection of a new genus to accommodate them. A list of the 71 tapeworms of the former, non-monophyletic subfamily Proteocephalinae, parasitising snakes and lizards, including species inquirendae, and the phylogenetically closely related Thaumasioscolex didelphidis from opossum, with selected characteristics, is also provided, together with a checklist of helminth parasites reported from E. carinatus.

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          Highlights

          • We describe the first proteocephalid cestode from the saw-scaled viper Echis carinatus.

          • The new ‘ Ophiotaenia’ is typified by the position of testes and embryophore size.

          • The new species phylogenetically clusters with snake cestodes from unrelated regions.

          • The transmission mechanism remains unknown but likely involves some arthropod prey.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates

            Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses. We present ModelFinder, a fast model-selection method that greatly improves the accuracy of phylogenetic estimates. The improvement is achieved by incorporating a model of rate-heterogeneity across sites not previously considered in this context, and by allowing concurrent searches of model-space and tree-space.
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              Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

              Summary: The two main functions of bioinformatics are the organization and analysis of biological data using computational resources. Geneious Basic has been designed to be an easy-to-use and flexible desktop software application framework for the organization and analysis of biological data, with a focus on molecular sequences and related data types. It integrates numerous industry-standard discovery analysis tools, with interactive visualizations to generate publication-ready images. One key contribution to researchers in the life sciences is the Geneious public application programming interface (API) that affords the ability to leverage the existing framework of the Geneious Basic software platform for virtually unlimited extension and customization. The result is an increase in the speed and quality of development of computation tools for the life sciences, due to the functionality and graphical user interface available to the developer through the public API. Geneious Basic represents an ideal platform for the bioinformatics community to leverage existing components and to integrate their own specific requirements for the discovery, analysis and visualization of biological data. Availability and implementation: Binaries and public API freely available for download at http://www.geneious.com/basic, implemented in Java and supported on Linux, Apple OSX and MS Windows. The software is also available from the Bio-Linux package repository at http://nebc.nerc.ac.uk/news/geneiousonbl. Contact: peter@biomatters.com
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                Author and article information

                Contributors
                Journal
                Int J Parasitol Parasites Wildl
                Int J Parasitol Parasites Wildl
                International Journal for Parasitology: Parasites and Wildlife
                Elsevier
                2213-2244
                17 March 2021
                April 2021
                17 March 2021
                : 14
                : 341-354
                Affiliations
                [a ]Natural History Museum, PO Box 6434, CH-1211, Geneva 6, Switzerland
                [b ]Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
                [c ]Central Veterinary Research Laboratory, Dubai, PO Box 597, United Arab Emirates
                [d ]Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, Czech Republic
                Author notes
                []Corresponding author. tscholz@ 123456paru.cas.cz
                Article
                S2213-2244(21)00038-9
                10.1016/j.ijppaw.2021.03.006
                8056141
                0f9c8711-2d92-49f8-8461-b73fd2a93220
                © 2021 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 20 February 2021
                : 8 March 2021
                : 8 March 2021
                Categories
                Regular Article

                tapeworms,onchoproteocephalidea,phylogenetic relationships,taxonomy,morphology,snakes,united arab emirates

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