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      A Promising Tool to Achieve Chemical Accuracy for Density Functional Theory Calculations on Y-NO Homolysis Bond Dissociation Energies

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          Abstract

          A DFT-SOFM-RBFNN method is proposed to improve the accuracy of DFT calculations on Y-NO (Y = C, N, O, S) homolysis bond dissociation energies (BDE) by combining density functional theory (DFT) and artificial intelligence/machine learning methods, which consist of self-organizing feature mapping neural networks (SOFMNN) and radial basis function neural networks (RBFNN). A descriptor refinement step including SOFMNN clustering analysis and correlation analysis is implemented. The SOFMNN clustering analysis is applied to classify descriptors, and the representative descriptors in the groups are selected as neural network inputs according to their closeness to the experimental values through correlation analysis. Redundant descriptors and intuitively biased choices of descriptors can be avoided by this newly introduced step. Using RBFNN calculation with the selected descriptors, chemical accuracy (≤1 kcal·mol −1) is achieved for all 92 calculated organic Y-NO homolysis BDE calculated by DFT-B3LYP, and the mean absolute deviations (MADs) of the B3LYP/6-31G(d) and B3LYP/STO-3G methods are reduced from 4.45 and 10.53 kcal·mol −1 to 0.15 and 0.18 kcal·mol −1, respectively. The improved results for the minimal basis set STO-3G reach the same accuracy as those of 6-31G(d), and thus B3LYP calculation with the minimal basis set is recommended to be used for minimizing the computational cost and to expand the applications to large molecular systems. Further extrapolation tests are performed with six molecules (two containing Si-NO bonds and two containing fluorine), and the accuracy of the tests was within 1 kcal·mol −1. This study shows that DFT-SOFM-RBFNN is an efficient and highly accurate method for Y-NO homolysis BDE. The method may be used as a tool to design new NO carrier molecules.

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              Neural network approach to quantum-chemistry data: accurate prediction of density functional theory energies.

              Artificial neural network (ANN) approach has been applied to estimate the density functional theory (DFT) energy with large basis set using lower-level energy values and molecular descriptors. A total of 208 different molecules were used for the ANN training, cross validation, and testing by applying BLYP, B3LYP, and BMK density functionals. Hartree-Fock results were reported for comparison. Furthermore, constitutional molecular descriptor (CD) and quantum-chemical molecular descriptor (QD) were used for building the calibration model. The neural network structure optimization, leading to four to five hidden neurons, was also carried out. The usage of several low-level energy values was found to greatly reduce the prediction error. An expected error, mean absolute deviation, for ANN approximation to DFT energies was 0.6+/-0.2 kcal mol(-1). In addition, the comparison of the different density functionals with the basis sets and the comparison of multiple linear regression results were also provided. The CDs were found to overcome limitation of the QD. Furthermore, the effective ANN model for DFT/6-311G(3df,3pd) and DFT/6-311G(2df,2pd) energy estimation was developed, and the benchmark results were provided.
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                Author and article information

                Journal
                Int J Mol Sci
                Int J Mol Sci
                ijms
                International Journal of Molecular Sciences
                Molecular Diversity Preservation International (MDPI)
                1422-0067
                2012
                28 June 2012
                : 13
                : 7
                : 8051-8070
                Affiliations
                [1 ]School of Computer Science and Information Technology, Northeast Normal University, Changchun 130017, China; E-Mails: lihz857@ 123456nenu.edu.cn (H.Z.L.); gaot080@ 123456nenu.edu.cn (T.G.); lihui@ 123456nenu.edu.cn (H.L.)
                [2 ]School of Life Sciences, Northeast Normal University, Changchun 130024, China
                [3 ]Institute of Functional Material Chemistry, Faculty of Chemistry, Northeast Normal University, Changchun 130024, China; E-Mail: taow587@ 123456nenu.edu.cn
                Author notes
                [* ]Authors to whom correspondence should be addressed; E-Mails: lhhu@ 123456nenu.edu.cn (L.H.H.); luyh@ 123456nenu.edu.cn (Y.H.L.); zmsu@ 123456nenu.edu.cn (Z.M.S.); Tel.: +86-431-8453-6338(L.H.H.); +86-431-8454-1126(Y.H.L.); +86-431-8509-9108(Z.M.S.); Fax: +86-431-8453-6331(L.H.H.); +86-431-8453-6331(Y.H.L.) +86-431-8568-4009(Z.M.S.).
                Article
                ijms-13-08051
                10.3390/ijms13078051
                3430220
                22942689
                0fdb8ad0-1c99-4f5d-a08f-ad5c83bd7ab3
                © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland.

                This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license ( http://creativecommons.org/licenses/by/3.0/).

                History
                : 25 May 2012
                : 19 June 2012
                : 25 June 2012
                Categories
                Article

                Molecular biology
                self-organizing feature mapping neural network,homolysis bond dissociation energies,density functional theory,y-no bond,radial basis function neural network

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