The transfer of Ca 2+ from the cytosol into the lumen of mitochondria is a crucial process that impacts cell signaling in multiple ways. Cytosolic Ca 2+ ([Ca 2+] cyto) can be excellently quantified with the ratiometric Ca 2+ probe fura-2, while genetically encoded Förster resonance energy transfer (FRET)-based fluorescent Ca 2+ sensors, the cameleons, are efficiently used to specifically measure Ca 2+ within organelles. However, because of a significant overlap of the fura-2 emission with the spectra of the cyan and yellow fluorescent protein of most of the existing cameleons, the measurement of fura-2 and cameleons within one given cell is a complex task. In this study, we introduce a novel approach to simultaneously assess [Ca 2+] cyto and mitochondrial Ca 2+ ([Ca 2+] mito) signals at the single cell level. In order to eliminate the spectral overlap we developed a novel red-shifted cameleon, D1GO-Cam, in which the green and orange fluorescent proteins were used as the FRET pair. This ratiometric Ca 2+ probe could be successfully targeted to mitochondria and was suitable to be used simultaneously with fura-2 to correlate [Ca 2+] cyto and [Ca 2+] mito within same individual cells. Our data indicate that depending on the kinetics of [Ca 2+] cyto rises there is a significant lag between onset of [Ca 2+] cyto and [Ca 2+] mito signals, pointing to a certain threshold of [Ca 2+] cyto necessary to activate mitochondrial Ca 2+ uptake. The temporal correlation between [Ca 2+] mito and [Ca 2+] cyto as well as the efficiency of the transfer of Ca 2+ from the cytosol into mitochondria varies between different cell types. Moreover, slow mitochondrial Ca 2+ extrusion and a desensitization of mitochondrial Ca 2+ uptake cause a clear difference in patterns of mitochondrial and cytosolic Ca 2+ oscillations of pancreatic beta-cells in response to D-glucose.