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      Archaeal Diversity in Biofilm Technologies Applied to Treat Urban and Industrial Wastewater: Recent Advances and Future Prospects

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          Abstract

          Biological wastewater treatment (WWT) frequently relies on biofilms for the removal of anthropogenic contaminants. The use of inert carrier materials to support biofilm development is often required, although under certain operating conditions microorganisms yield structures called granules, dense aggregates of self-immobilized cells with the characteristics of biofilms maintained in suspension. Molecular techniques have been successfully applied in recent years to identify the prokaryotic communities inhabiting biofilms in WWT plants. Although methanogenic Archaea are widely acknowledged as key players for the degradation of organic matter in anaerobic bioreactors, other biotechnological functions fulfilled by Archaea are less explored, and research on their significance and potential for WWT is largely needed. In addition, the occurrence of biofilms in WWT plants can sometimes be a source of operational problems. This is the case for membrane bioreactors (MBR), an advanced technology that combines conventional biological treatment with membrane filtration, which is strongly limited by biofouling, defined as the undesirable accumulation of microbial biofilms and other materials on membrane surfaces. The prevalence and spatial distribution of archaeal communities in biofilm-based WWT as well as their role in biofouling are reviewed here, in order to illustrate the significance of this prokaryotic cellular lineage in engineered environments devoted to WWT.

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          Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

          The archaeal domain is currently divided into two major phyla, the Euryarchaeota and Crenarchaeota. During the past few years, diverse groups of uncultivated mesophilic archaea have been discovered and affiliated with the Crenarchaeota. It was recently recognized that these archaea have a major role in geochemical cycles. Based on the first genome sequence of a crenarchaeote, Cenarchaeum symbiosum, we show that these mesophilic archaea are different from hyperthermophilic Crenarchaeota and branch deeper than was previously assumed. Our results indicate that C. symbiosum and its relatives are not Crenarchaeota, but should be considered as a third archaeal phylum, which we propose to name Thaumarchaeota (from the Greek 'thaumas', meaning wonder).
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            Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea.

            Although of limited metabolic diversity, methanogenic archaea or methanogens possess great phylogenetic and ecological diversity. Only three types of methanogenic pathways are known: CO(2)-reduction, methyl-group reduction, and the aceticlastic reaction. Cultured methanogens are grouped into five orders based upon their phylogeny and phenotypic properties. In addition, uncultured methanogens that may represent new orders are present in many environments. The ecology of methanogens highlights their complex interactions with other anaerobes and the physical and chemical factors controlling their function.
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              Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

              C Woese, G. Fox (1977)
              A phylogenetic analysis based upon ribosomal RNA sequence characterization reveals that living systems represent one of three aboriginal lines of descent: (i) the eubacteria, comprising all typical bacteria; (ii) the archaebacteria, containing methanogenic bacteria; and (iii) the urkaryotes, now represented in the cytoplasmic component of eukaryotic cells.
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                Author and article information

                Journal
                Int J Mol Sci
                Int J Mol Sci
                ijms
                International Journal of Molecular Sciences
                Molecular Diversity Preservation International (MDPI)
                1422-0067
                September 2013
                09 September 2013
                : 14
                : 9
                : 18572-18598
                Affiliations
                [1 ]Environmental Microbiology Group, Department of Microbiology, Faculty of Pharmacy, and Institute of Water Research, University of Granada, Campus de Cartuja s/n, Granada 18071, Spain; E-Mails: cintagomez@ 123456ugr.es (C.G.-S.); mrodelas@ 123456ugr.es (B.R.); jgl@ 123456ugr.es (J.G.-L.)
                [2 ]Environmental Microbiology Group, Department of Civil Engineering, and Institute of Water Research, University of Granada; Campus de Cartuja s/n, Granada 18071, Spain; E-Mails: agon@ 123456ugr.es (A.G.-M.); fosorio@ 123456ugr.es (F.O.)
                Author notes
                [†]

                Present address: INRA, UMR 1347 Agroecology, 17 rue Sully, Dijon 21000, France.

                [* ]Author to whom correspondence should be addressed; E-Mail: kadiya.calderon@ 123456dijon.inra.fr ; Tel.: +33-3-80-69-3587; Fax: +33-3-80-69-32-24.
                Article
                ijms-14-18572
                10.3390/ijms140918572
                3794796
                24022691
                10504866-4aea-46dd-a881-963b15217f91
                © 2013 by the authors; licensee MDPI, Basel, Switzerland

                This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license ( http://creativecommons.org/licenses/by/3.0/).

                History
                : 18 July 2013
                : 22 August 2013
                : 30 August 2013
                Categories
                Review

                Molecular biology
                archaea,biofilm,biofouling,wastewater treatment,wwt,membrane bioreactor,mbr,granular sludge
                Molecular biology
                archaea, biofilm, biofouling, wastewater treatment, wwt, membrane bioreactor, mbr, granular sludge

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