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      Christelenkidae, a new extinct family based on a new taxon from Eocene Baltic amber (Diptera: Acalyptratae), with X-ray synchrotron microtomography imaging of its structures

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      Arthropod Systematics & Phylogeny
      Pensoft Publishers

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          Abstract

          A new family of Diptera Acalyptratae, Christelenkidae Roháček fam. nov., is established for Christelenka multiplex Roháček gen. et sp. nov., an unusual extinct taxon described from a unique male specimen preserved in Baltic amber (Mid-late Eocene, ca 48–34 Ma). Apart from detailed examination by light microscopy and photography, the holotype of the new species has also been studied by means of X-ray synchrotron microtomography with the aim of obtaining additional morphological data for consideration of its relationships. Because of a very peculiar combination of morphological characters, the new family is tentatively considered a separate lineage of Acalyptratae having no apparent sister-group relationship with any of the known families. Its probable relationships to some families of Opomyzoidea and Ephydroidea are discussed.

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            The ASTRA Toolbox: A platform for advanced algorithm development in electron tomography.

            We present the ASTRA Toolbox as an open platform for 3D image reconstruction in tomography. Most of the software tools that are currently used in electron tomography offer limited flexibility with respect to the geometrical parameters of the acquisition model and the algorithms used for reconstruction. The ASTRA Toolbox provides an extensive set of fast and flexible building blocks that can be used to develop advanced reconstruction algorithms, effectively removing these limitations. We demonstrate this flexibility, the resulting reconstruction quality, and the computational efficiency of this toolbox by a series of experiments, based on experimental dual-axis tilt series.
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              Fast and flexible X-ray tomography using the ASTRA toolbox.

              Object reconstruction from a series of projection images, such as in computed tomography (CT), is a popular tool in many different application fields. Existing commercial software typically provides sufficiently accurate and convenient-to-use reconstruction tools to the end-user. However, in applications where a non-standard acquisition protocol is used, or where advanced reconstruction methods are required, the standard software tools often are incapable of computing accurate reconstruction images. This article introduces the ASTRA Toolbox. Aimed at researchers across multiple tomographic application fields, the ASTRA Toolbox provides a highly efficient and highly flexible open source set of tools for tomographic projection and reconstruction. The main features of the ASTRA Toolbox are discussed and several use cases are presented.

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                Contributors
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                Journal
                Arthropod Systematics & Phylogeny
                ASP
                Pensoft Publishers
                1864-8312
                1863-7221
                May 25 2023
                May 25 2023
                : 81
                : 475-498
                Article
                10.3897/asp.81.e101441
                10cb2a99-c250-4ec0-ab7b-672d508c92dd
                © 2023

                http://creativecommons.org/licenses/by/4.0/

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