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      ACBD5 and VAPB mediate membrane associations between peroxisomes and the ER

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          Abstract

          Costello et al. identify ACBD5 and VAPB as key components of a peroxisome–ER tether in mammalian cells. Disruption of this tethering complex leads to reduced peroxisomal membrane expansion and increased peroxisomal movement.

          Abstract

          Peroxisomes (POs) and the endoplasmic reticulum (ER) cooperate in cellular lipid metabolism and form tight structural associations, which were first observed in ultrastructural studies decades ago. PO–ER associations have been suggested to impact on a diverse number of physiological processes, including lipid metabolism, phospholipid exchange, metabolite transport, signaling, and PO biogenesis. Despite their fundamental importance to cell metabolism, the mechanisms by which regions of the ER become tethered to POs are unknown, in particular in mammalian cells. Here, we identify the PO membrane protein acyl-coenzyme A–binding domain protein 5 (ACBD5) as a binding partner for the resident ER protein vesicle-associated membrane protein-associated protein B (VAPB). We show that ACBD5–VAPB interaction regulates PO–ER associations. Moreover, we demonstrate that loss of PO–ER association perturbs PO membrane expansion and increases PO movement. Our findings reveal the first molecular mechanism for establishing PO–ER associations in mammalian cells and report a new function for ACBD5 in PO–ER tethering.

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          The NumPy array: a structure for efficient numerical computation

          In the Python world, NumPy arrays are the standard representation for numerical data. Here, we show how these arrays enable efficient implementation of numerical computations in a high-level language. Overall, three techniques are applied to improve performance: vectorizing calculations, avoiding copying data in memory, and minimizing operation counts. We first present the NumPy array structure, then show how to use it for efficient computation, and finally how to share array data with other libraries.
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            Cryosectioning and immunolabeling.

            In this protocol, we describe cryoimmunolabeling methods for the subcellular localization of proteins and certain lipids. The methods start with chemical fixation of cells and tissue in formaldehyde (FA) and/or glutaraldehyde (GA), sometimes supplemented with acrolein. Cell and tissue blocks are then immersed in 2.3 M sucrose before freezing in liquid nitrogen. Thin cryosections, cut in an ultracryotome, can be single- or multiple immunolabeled with differently sized gold particles, contrasted and viewed in an electron microscope. Semi-thin cryosections can be used for immunofluorescence microscopy. We describe the detailed procedures that have been developed and tested in practice in our laboratory during the past decades.
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              Bridging the gap: Membrane contact sites in signaling, metabolism, and organelle dynamics

              Regions of close apposition between two organelles, often referred to as membrane contact sites (MCSs), mostly form between the endoplasmic reticulum and a second organelle, although contacts between mitochondria and other organelles have also begun to be characterized. Although these contact sites have been noted since cells first began to be visualized with electron microscopy, the functions of most of these domains long remained unclear. The last few years have witnessed a dramatic increase in our understanding of MCSs, revealing the critical roles they play in intracellular signaling, metabolism, the trafficking of metabolites, and organelle inheritance, division, and transport.
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                Author and article information

                Journal
                J Cell Biol
                J. Cell Biol
                jcb
                jcb
                The Journal of Cell Biology
                The Rockefeller University Press
                0021-9525
                1540-8140
                February 2017
                February 2017
                : 216
                : 2
                : 331-342
                Affiliations
                [1 ]Biosciences, University of Exeter, Exeter EX4 4QD, England, UK
                [2 ]Max Planck Institute for Molecular Biomedicine, 48149 Muenster, Germany
                [3 ]Institute for Clinical Chemistry, Medical Faculty Mannheim, University of Heidelberg, 68167 Mannheim, Germany
                [4 ]Institute of Neuroanatomy, Center for Biomedicine and Medical Technology Mannheim, Medical Faculty Mannheim, University of Heidelberg, 68167 Mannheim, Germany
                Author notes
                Correspondence to Michael Schrader: M.Schrader@ 123456exeter.ac.uk
                [*]

                M. Islinger and M. Schrader contributed equally to this paper.

                Author information
                http://orcid.org/0000-0003-4669-985X
                http://orcid.org/0000-0002-8099-8776
                http://orcid.org/0000-0002-1721-5476
                http://orcid.org/0000-0002-2135-5148
                http://orcid.org/0000-0002-9752-6943
                http://orcid.org/0000-0002-3315-1724
                http://orcid.org/0000-0001-8881-0902
                http://orcid.org/0000-0003-2146-0535
                Article
                201607055
                10.1083/jcb.201607055
                5294785
                28108524
                11390174-b97d-4354-bd60-925f38706cfb
                © 2017 Costello et al.

                This article is available under a Creative Commons License (Attribution 4.0 International, as described at https://creativecommons.org/licenses/by/4.0/).

                History
                : 15 July 2016
                : 31 October 2016
                : 22 December 2016
                Funding
                Funded by: Biotechnology and Biological Sciences Research Council, DOI https://doi.org/10.13039/501100000268;
                Award ID: BB/K006231/1
                Award ID: BB/N01541X/1
                Funded by: Wellcome Trust, DOI https://doi.org/10.13039/100004440;
                Award ID: WT097835MF
                Award ID: WT105618MA
                Funded by: Fundação para a Ciência e a Tecnologia, DOI https://doi.org/10.13039/501100001871;
                Award ID: SFRH/BPD/90084/2012
                Categories
                Research Articles
                Report
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                Cell biology
                Cell biology

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