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      Biotransformation of Two Pharmaceuticals by the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis

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          Abstract

          The biotransformation of some micropollutants has previously been observed to be positively associated with ammonia oxidation activities and the transcript abundance of the archaeal ammonia monooxygenase gene ( amoA) in nitrifying activated sludge. Given the increasing interest in and potential importance of ammonia-oxidizing archaea (AOA), we investigated the capabilities of an AOA pure culture, Nitrososphaera gargensis, to biotransform ten micropollutants belonging to three structurally similar groups (i.e., phenylureas, tertiary amides, and tertiary amines). N. gargensis was able to biotransform two of the tertiary amines, mianserin (MIA) and ranitidine (RAN), exhibiting similar compound specificity as two ammonia-oxidizing bacteria (AOB) strains that were tested for comparison. The same MIA and RAN biotransformation reactions were carried out by both the AOA and AOB strains. The major transformation product (TP) of MIA, α-oxo MIA was likely formed via a two-step oxidation reaction. The first hydroxylation step is typically catalyzed by monooxygenases. Three RAN TP candidates were identified from nontarget analysis. Their tentative structures and possible biotransformation pathways were proposed. The biotransformation of MIA and RAN only occurred when ammonia oxidation was active, suggesting cometabolic transformations. Consistently, a comparative proteomic analysis revealed no significant differential expression of any protein-encoding gene in N. gargensis grown on ammonium with MIA or RAN compared with standard cultivation on ammonium only. Taken together, this study provides first important insights regarding the roles played by AOA in micropollutant biotransformation.

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          Short-term assay of soil urease activity using colorimetric determination of ammonium

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            The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

            Thaumarchaeota range among the most abundant archaea on Earth. Initially classified as ‘mesophilic Crenarchaeota’, comparative genomics has recently revealed that they form a separate and deep-branching phylum within the Archaea. This novel phylum comprises in 16S rRNA gene trees not only all known archaeal ammonia oxidizers but also several clusters of environmental sequences representing microorganisms with unknown energy metabolism. Ecophysiological studies of ammonia-oxidizing Thaumarchaeota suggest adaptation to low ammonia concentrations and an autotrophic or possibly mixotrophic lifestyle. Extrapolating from the wide substrate range of copper-containing membrane-bound monooxygenases, to which the thaumarchaeal ammonia monooxygenases belong, the use of substrates other than ammonia for generating energy by some members of the Thaumarchaeota seems likely.
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              Evaluating pesticide degradation in the environment: blind spots and emerging opportunities.

              The benefits of global pesticide use come at the cost of their widespread occurrence in the environment. An array of abiotic and biotic transformations effectively removes pesticides from the environment, but may give rise to potentially hazardous transformation products. Despite a large body of pesticide degradation data from regulatory testing and decades of pesticide research, it remains difficult to anticipate the extent and pathways of pesticide degradation under specific field conditions. Here, we review the major scientific challenges in doing so and discuss emerging opportunities to identify pesticide degradation processes in the field.
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                Author and article information

                Journal
                Environ Sci Technol
                Environ. Sci. Technol
                es
                esthag
                Environmental Science & Technology
                American Chemical Society
                0013-936X
                1520-5851
                05 April 2016
                03 May 2016
                : 50
                : 9
                : 4682-4692
                Affiliations
                []Eawag, Swiss Federal Institute of Aquatic Science and Technology , 8600 Dübendorf, Switzerland
                []Department of Civil and Environmental Engineering, University of Illinois at Urbana−Champaign , Urbana, Illinois 61801, United States
                [§ ]Department of Microbiology and Ecosystem Science, Division of Microbial Ecology, Research Network “Chemistry meets Microbiology”, University of Vienna , Althanstrasse 14, 1090 Vienna, Austria
                []School of Civil and Environmental Engineering, Cornell University , Ithaca, New York 14853, United States
                []Department of Proteomics, Helmholtz-Centre for Environmental Research − UFZ , 04318 Leipzig, Germany
                [# ]Department of Civil and Environmental Engineering, Northeastern University , Boston, Massachusetts 02115, United States
                []Department of Environmental Systems Science, ETH Zürich , 8092 Zürich, Switzerland
                Author notes
                [* ]Yujie Men. Address: 3209 Newmark Civil Engineering Laboratory, MC-250 205 North Mathews Ave., Urbana, IL 61801-2352, USA. Email: ymen2@ 123456illinois.edu . Phone: (217) 244-8259.
                Article
                10.1021/acs.est.5b06016
                4981450
                27046099
                128fd538-5e64-42f8-a149-332ca11db86d
                Copyright © 2016 American Chemical Society

                This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes.

                History
                : 08 December 2015
                : 05 April 2016
                : 25 March 2016
                Categories
                Article
                Custom metadata
                es5b06016
                es-2015-06016a

                General environmental science
                General environmental science

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