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      How significant is a protein structure similarity with TM-score = 0.5?

      Bioinformatics (Oxford, England)
      Oxford University Press (OUP)

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          Abstract

          Protein structure similarity is often measured by root mean squared deviation, global distance test score and template modeling score (TM-score). However, the scores themselves cannot provide information on how significant the structural similarity is. Also, it lacks a quantitative relation between the scores and conventional fold classifications. This article aims to answer two questions: (i) what is the statistical significance of TM-score? (ii) What is the probability of two proteins having the same fold given a specific TM-score?

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          Journal
          20164152
          2913670
          10.1093/bioinformatics/btq066

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