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      Regional differentiation and post-glacial expansion of the Atlantic silverside, Menidia menidia, an annual fish with high dispersal potential

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          Abstract

          The coastal marine environment of the Northwest Atlantic contains strong environmental gradients that create distinct marine biogeographic provinces by limiting dispersal, recruitment, and survival. This region has also been subjected to numerous Pleistocene glacial cycles, resulting in repeated extirpations and recolonizations in northern populations of marine organisms. In this study, we examined patterns of genetic structure and historical demography in the Atlantic silverside, Menidia menidia, an annual marine fish with high dispersal potential but with well-documented patterns of clinal phenotypic adaptation along the environmental gradients of the Northwest Atlantic. Contrary to previous studies indicating genetic homogeneity that should preclude regional adaptation, results demonstrate subtle but significant ( F ST = 0.07; P < 0.0001) genetic structure among three phylogeographic regions that partially correspond with biogeographic provinces, suggesting regional limits to gene flow. Tests for non-equilibrium population dynamics and latitudinal patterns in genetic diversity indicate northward population expansion from a single southern refugium following the last glacial maximum, suggesting that phylogeographic and phenotypic patterns have relatively recent origins. The recovery of phylogeographic structure and the partial correspondence of these regions to recognized biogeographic provinces suggest that the environmental gradients that shape biogeographic patterns in the Northwest Atlantic may also limit gene flow in M. menidia, creating phylogeographic structure and contributing to the creation of latitudinal phenotypic clines in this species .

          Electronic supplementary material

          The online version of this article (doi:10.1007/s00227-010-1577-3) contains supplementary material, which is available to authorized users.

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          Most cited references72

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          Arlequin (version 3.0): An integrated software package for population genetics data analysis

          Arlequin ver 3.0 is a software package integrating several basic and advanced methods for population genetics data analysis, like the computation of standard genetic diversity indices, the estimation of allele and haplotype frequencies, tests of departure from linkage equilibrium, departure from selective neutrality and demographic equilibrium, estimation or parameters from past population expansions, and thorough analyses of population subdivision under the AMOVA framework. Arlequin 3 introduces a completely new graphical interface written in C++, a more robust semantic analysis of input files, and two new methods: a Bayesian estimation of gametic phase from multi-locus genotypes, and an estimation of the parameters of an instantaneous spatial expansion from DNA sequence polymorphism. Arlequin can handle several data types like DNA sequences, microsatellite data, or standard multi-locus genotypes. A Windows version of the software is freely available on http://cmpg.unibe.ch/software/arlequin3.
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            Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

            Procedures utilizing Chelex 100 chelating resin have been developed for extracting DNA from forensic-type samples for use with the PCR. The procedures are simple, rapid, involve no organic solvents and do not require multiple tube transfers for most types of samples. The extraction of DNA from semen and very small bloodstains using Chelex 100 is as efficient or more efficient than using proteinase K and phenol-chloroform extraction. DNA extracted from bloodstains seems less prone to contain PCR inhibitors when prepared by this method. The Chelex method has been used with amplification and typing at the HLA DQ alpha locus to obtain the DQ alpha genotypes of many different types of samples, including whole blood, bloodstains, seminal stains, buccal swabs, hair and post-coital samples. The results of a concordance study are presented in which the DQ alpha genotypes of 84 samples prepared using Chelex or using conventional phenol-chloroform extraction are compared. The genotypes obtained using the two different extraction methods were identical for all samples tested.
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              Some genetic consequences of ice ages, and their role in divergence and speciation

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                Author and article information

                Contributors
                +604-822-9250 , mach5@interchange.ubc.ca
                Journal
                Mar Biol
                Mar. Biol
                Marine Biology
                Springer-Verlag (Berlin/Heidelberg )
                0025-3162
                1432-1793
                23 November 2010
                23 November 2010
                2011
                : 158
                : 515-530
                Affiliations
                [ ]Institute for Resource, Environment and Sustainability, Aquatic Ecosystem Research Laboratories, University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4 Canada
                [ ]Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215 USA
                [ ]School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794-5000 USA
                [ ]Department of Ecology and Evolutionary Biology, University of California Los Angeles, 621 Charles E. Young Drive South, Los Angeles, CA 90045 USA
                Author notes

                Communicated by C. Riginos.

                Article
                1577
                10.1007/s00227-010-1577-3
                3873031
                24391257
                12e50e66-031d-445e-a894-79995f16a248
                © The Author(s) 2010
                History
                : 7 May 2010
                : 2 November 2010
                Categories
                Original Paper
                Custom metadata
                © Springer-Verlag 2011

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