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      PTPN23 binds the dynein adaptor BICD1 and is required for endocytic sorting of neurotrophin receptors

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          ABSTRACT

          Signalling by target-derived neurotrophins is essential for the correct development of the nervous system and its maintenance throughout life. Several aspects concerning the lifecycle of neurotrophins and their receptors have been characterised over the years, including the formation, endocytosis and trafficking of signalling-competent ligand–receptor complexes. However, the molecular mechanisms directing the sorting of activated neurotrophin receptors are still elusive. Previously, our laboratory identified Bicaudal-D1 (BICD1), a dynein motor adaptor, as a key factor for lysosomal degradation of brain-derived neurotrophic factor (BDNF)-activated TrkB (also known as NTRK2) and p75 NTR (also known as NGFR) in motor neurons. Here, using a proteomics approach, we identified protein tyrosine phosphatase, non-receptor type 23 (PTPN23), a member of the endosomal sorting complexes required for transport (ESCRT) machinery, in the BICD1 interactome. Molecular mapping revealed that PTPN23 is not a canonical BICD1 cargo; instead, PTPN23 binds the N-terminus of BICD1, which is also essential for the recruitment of cytoplasmic dynein. In line with the BICD1-knockdown phenotype, loss of PTPN23 leads to increased accumulation of BDNF-activated p75 NTR and TrkB in swollen vacuole-like compartments, suggesting that neuronal PTPN23 is a novel regulator of the endocytic sorting of neurotrophin receptors.

          Abstract

          [Related article:] Highlighted Article: PTPN23 associates with BICD1 via its dynein-binding region, and its loss results in accumulation of neurotrophin receptors in enlarged, ubiquitylated sorting compartments.

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          Most cited references62

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          The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data

          Affinity purification coupled with mass spectrometry (AP-MS) is now a widely used approach for the identification of protein-protein interactions. However, for any given protein of interest, determining which of the identified polypeptides represent bona fide interactors versus those that are background contaminants (e.g. proteins that interact with the solid-phase support, affinity reagent or epitope tag) is a challenging task. While the standard approach is to identify nonspecific interactions using one or more negative controls, most small-scale AP-MS studies do not capture a complete, accurate background protein set. Fortunately, negative controls are largely bait-independent. Hence, aggregating negative controls from multiple AP-MS studies can increase coverage and improve the characterization of background associated with a given experimental protocol. Here we present the Contaminant Repository for Affinity Purification (the CRAPome) and describe the use of this resource to score protein-protein interactions. The repository (currently available for Homo sapiens and Saccharomyces cerevisiae) and computational tools are freely available online at www.crapome.org.
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            The cytoplasmic dynein transport machinery and its many cargoes

            Cytoplasmic dynein-1 is an important microtubule-based motor in many eukaryotic cells. Dynein has critical roles both in interphase and during cell division. Here we focus on interphase cargoes of dynein, which include membrane-bound organelles, RNAs, protein complexes and viruses. A central challenge in the field is to understand how a single motor can transport such a diverse array of cargoes and how this process is regulated. The molecular basis by which each cargo is linked to dynein and its cofactor dynactin has started to emerge. Of particular importance for this process is a set of coiled coil proteins — ‘activating adaptors’ — which both recruit dynein–dynactin to their cargoes and activate dynein motility.
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              A Simple Role for BDNF in Learning and Memory?

              Since its discovery almost three decades ago, the secreted neurotrophin brain-derived neurotrophic factor (BDNF) has been firmly implicated in the differentiation and survival of neurons of the CNS. More recently, BDNF has also emerged as an important regulator of synaptogenesis and synaptic plasticity mechanisms underlying learning and memory in the adult CNS. In this review we will discuss our knowledge about the multiple intracellular signalling pathways activated by BDNF, and the role of this neurotrophin in long-term synaptic plasticity and memory formation as well as in synaptogenesis. We will show that maturation of BDNF, its cellular localization and its ability to regulate both excitatory and inhibitory synapses in the CNS may result in conflicting alterations in synaptic plasticity and memory formation. Lack of a precise knowledge about the mechanisms by which BDNF influences higher cognitive functions and complex behaviours may constitute a severe limitation in the possibility to devise BDNF-based therapeutics for human disorders of the CNS.

                Author and article information

                Journal
                J Cell Sci
                J. Cell. Sci
                JCS
                joces
                Journal of Cell Science
                The Company of Biologists Ltd
                0021-9533
                1477-9137
                15 March 2020
                30 March 2020
                30 March 2020
                : 133
                : 6
                : jcs242412
                Affiliations
                [1 ]Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, University College London , London WC1N 3BG, UK
                [2 ]William Harvey Research Institute, Queen Mary University of London , London EC1M 6BQ, UK
                [3 ]Electron Microscopy, The Francis Crick Institute , 1 Midland Road, London NW1 1ST, UK
                [4 ]Proteomics Science Technology Platforms, The Francis Crick Institute , 1 Midland Road, London NW1 1ST, UK
                [5 ]UK Dementia Research Institute, University College London , London WC1E 6BT, UK
                [6 ]Discoveries Centre for Regenerative and Precision Medicine, University College London Campus , London WC1N 3BG, UK
                Author notes
                [* ]Author for correspondence ( giampietro.schiavo@ 123456ucl.ac.uk )
                Author information
                http://orcid.org/0000-0002-4319-8745
                Article
                JCS242412
                10.1242/jcs.242412
                7132798
                32079660
                13108854-a6a5-4141-9374-72b2cf6ac0ef
                © 2020. Published by The Company of Biologists Ltd

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 29 November 2019
                : 4 February 2020
                Funding
                Funded by: Biotechnology and Biological Sciences Research Council, http://dx.doi.org/10.13039/501100000268;
                Award ID: 515092 and 533334
                Funded by: Motor Neurone Disease Association, http://dx.doi.org/10.13039/501100000406;
                Award ID: 880-792
                Funded by: Comisión Nacional de Investigación Científica y Tecnológica, http://dx.doi.org/10.13039/501100002848;
                Award ID: 2016/72170645
                Funded by: Wellcome Trust, http://dx.doi.org/10.13039/100010269;
                Award ID: 107116/Z/15/Z
                Funded by: Horizon 2020 Framework Programme, http://dx.doi.org/10.13039/100010661;
                Award ID: 739572
                Funded by: UK Dementia Research Institute Foundation;
                Categories
                139
                Research Article

                Cell biology
                intracellular sorting,motor neuron,p75ntr,trafficking,trkb
                Cell biology
                intracellular sorting, motor neuron, p75ntr, trafficking, trkb

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