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      Glycolipid composition of the heterocyst envelope of Anabaena sp. PCC 7120 is crucial for diazotrophic growth and relies on the UDP‐galactose 4‐epimerase HgdA

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          Abstract

          The nitrogenase complex in the heterocysts of the filamentous freshwater cyanobacterium Anabaenasp. PCC 7120 fixes atmospheric nitrogen to allow diazotrophic growth. The heterocyst cell envelope protects the nitrogenase from oxygen and consists of a polysaccharide and a glycolipid layer that are formed by a complex process involving the recruitment of different proteins. Here, we studied the function of the putative nucleoside‐diphosphate‐sugar epimerase HgdA, which along with HgdB and HgdC is essential for deposition of the glycolipid layer and growth without a combined nitrogen source. Using site‐directed mutagenesis and single homologous recombination approach, we performed a thoroughly functional characterization of HgdA and confirmed that the glycolipid layer of the hgdAmutant heterocyst is aberrant as shown by transmission electron microscopy and chemical analysis. The hgdA gene was expressed during late stages of the heterocyst differentiation. GFP‐tagged HgdA protein localized inside the heterocysts. The purified HgdA protein had UDP‐galactose 4‐epimerase activity in vitro. This enzyme could be responsible for synthesis of heterocyst‐specific glycolipid precursors, which could be transported over the cell wall by the ABC transporter components HgdB/HgdC.

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          BLAST-EXPLORER helps you building datasets for phylogenetic analysis

          Background The right sampling of homologous sequences for phylogenetic or molecular evolution analyses is a crucial step, the quality of which can have a significant impact on the final interpretation of the study. There is no single way for constructing datasets suitable for phylogenetic analysis, because this task intimately depends on the scientific question we want to address, Moreover, database mining softwares such as BLAST which are routinely used for searching homologous sequences are not specifically optimized for this task. Results To fill this gap, we designed BLAST-Explorer, an original and friendly web-based application that combines a BLAST search with a suite of tools that allows interactive, phylogenetic-oriented exploration of the BLAST results and flexible selection of homologous sequences among the BLAST hits. Once the selection of the BLAST hits is done using BLAST-Explorer, the corresponding sequence can be imported locally for external analysis or passed to the phylogenetic tree reconstruction pipelines available on the Phylogeny.fr platform. Conclusions BLAST-Explorer provides a simple, intuitive and interactive graphical representation of the BLAST results and allows selection and retrieving of the BLAST hit sequences based a wide range of criterions. Although BLAST-Explorer primarily aims at helping the construction of sequence datasets for further phylogenetic study, it can also be used as a standard BLAST server with enriched output. BLAST-Explorer is available at http://www.phylogeny.fr
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            Chemical and biological evolution of nucleotide-binding protein.

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              ABSORPTION OF LIGHT BY CHLOROPHYLL SOLUTIONS

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                Author and article information

                Contributors
                iris.maldener@uni-tuebingen.de
                Journal
                Microbiologyopen
                Microbiologyopen
                10.1002/(ISSN)2045-8827
                MBO3
                MicrobiologyOpen
                John Wiley and Sons Inc. (Hoboken )
                2045-8827
                25 February 2019
                August 2019
                : 8
                : 8 ( doiID: 10.1002/mbo3.v8.8 )
                : e00811
                Affiliations
                [ 1 ] Organismic Interactions, Interfaculty Institute of Microbiology and Infection Medicine Eberhard Karls University of Tübingen Tübingen Germany
                Author notes
                [*] [* ] Correspondence

                Iris Maldener, Organismic Interactions, Interfaculty Institute of Microbiology and Infection Medicine, Eberhard Karls University of Tübingen, Tübingen, Germany.

                Email: iris.maldener@ 123456uni-tuebingen.de

                Author information
                https://orcid.org/0000-0002-9776-268X
                https://orcid.org/0000-0002-1784-5638
                Article
                MBO3811
                10.1002/mbo3.811
                6692557
                30803160
                136600d6-8a3c-454b-be4a-c5ee7de7c657
                © 2019 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 10 December 2018
                : 10 January 2019
                : 14 January 2019
                Page count
                Figures: 9, Tables: 3, Pages: 15, Words: 9615
                Funding
                Funded by: Deutsche Forschungsgemeinschaft
                Award ID: SFB766, GRK1708
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                mbo3811
                August 2019
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.6.7 mode:remove_FC converted:14.08.2019

                Microbiology & Virology
                anabaenasp. pcc 7120,cyanobacterium,epimerase,glycolipids,heterocyst differentiation,hgda

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