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      Global biogeography, cryptic species and systematic issues in the shrimp genus Hippolyte Leach, 1814 (Decapoda: Caridea: Hippolytidae) by multimarker analyses

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          Abstract

          Hippolyte is a genus of small bodied marine shrimps, with a global distribution. Here, we studied the phylogenetic and biogeographic relationships amongst the species of this genus with two mitochondrial and two nuclear markers, using Bayesian Inference, Maximum Likelihood, genetic divergence, molecular clock and S-DIVA. In addition, the Indo-West Pacific genus Alcyonohippolyte was included. Based on sequences from 57 specimens of 27 species, we recovered a robust biogeographic scenario that shows the Indo-West Pacific as the probable ancestral area of the genus Hippolyte, which emerged in the Paleocene, followed by dispersal in three general directions: (1) South Pacific, (2) eastern Atlantic and Mediterranean Sea and (3) Americas, the latter with a primary colonization in the eastern Pacific followed by a radiation into the western Atlantic. Our analysis reveals that the species of the H. ventricosa group do not constitute a monophyletic group and Alcyonohippolyte does not constitute a reciprocally monophyletic group to Hippolyte, with both genera herein synonimised. The relationships and systematic status of several transisthmian and Atlantic species are clarified.

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          RASP (Reconstruct Ancestral State in Phylogenies): a tool for historical biogeography.

          We announce the release of Reconstruct Ancestral State in Phylogenies (RASP), a user-friendly software package for inferring historical biogeography through reconstructing ancestral geographic distributions on phylogenetic trees. RASP utilizes the widely used Statistical-Dispersal Vicariance Analysis (S-DIVA), the Dispersal-Extinction-Cladogenesis (DEC) model (Lagrange), a Statistical DEC model (S-DEC) and BayArea. It provides a graphical user interface (GUI) to specify a phylogenetic tree or set of trees and geographic distribution constraints, draws pie charts on the nodes of a phylogenetic tree to indicate levels of uncertainty, and generates high-quality exportable graphical results. RASP can run on both Windows and Mac OS X platforms. All documentation and source code for RASP is freely available at http://mnh.scu.edu.cn/soft/blog/RASP.
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            Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution

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              New dates and new rates for divergence across the Isthmus of Panama

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                Author and article information

                Contributors
                mterossirm@gmail.com
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                27 July 2017
                27 July 2017
                2017
                : 7
                : 6697
                Affiliations
                [1 ]ISNI 0000 0004 1937 0722, GRID grid.11899.38, Laboratory of Bioecology and Crustacean Systematics (LBSC), Department of Biology, Faculty of Philosophy, Sciences and Letters at Ribeirão Preto (FFCLRP), , University of São Paulo (USP), ; Avenida Bandeirantes 3900, CEP 14040-901, Ribeirão Preto, São Paulo Brazil
                [2 ]GRID grid.440504.1, , Oxford University Museum of Natural History, ; Parks Road, Oxford, OX1 3PW UK
                Author information
                http://orcid.org/0000-0002-8497-187X
                Article
                6756
                10.1038/s41598-017-06756-1
                5532279
                28751634
                13719423-83db-45d3-bac5-6c7a3a733c24
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 6 March 2017
                : 30 May 2017
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