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      Inhibition of histone methyltransferase DOT1L silences ERα gene and blocks proliferation of antiestrogen-resistant breast cancer cells

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          Abstract

          Pharmacological inhibition of DOT1L blocks estrogen receptor signaling in breast cancer.

          Abstract

          Breast cancer (BC) resistance to endocrine therapy results from constitutively active or aberrant estrogen receptor α (ERα) signaling, and ways to block ERα pathway in these tumors are sought after. We identified the H3K79 methyltransferase DOT1L as a novel cofactor of ERα in BC cell chromatin, where the two proteins colocalize to regulate estrogen target gene transcription. DOT1L blockade reduces proliferation of hormone-responsive BC cells in vivo and in vitro, consequent to cell cycle arrest and apoptotic cell death, with widespread effects on ER-dependent gene transcription, including ERα and FOXA1 gene silencing. Antiestrogen-resistant BC cells respond to DOT1L inhibition also in mouse xenografts, with reduction in ERα levels, H3K79 methylation, and tumor growth. These results indicate that DOT1L is an exploitable epigenetic target for treatment of endocrine therapy–resistant ERα-positive BCs.

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          Most cited references41

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          Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

          The cBioPortal for Cancer Genomics (http://cbioportal.org) provides a Web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer tissues and cell lines into readily understandable genetic, epigenetic, gene expression, and proteomic events. The query interface combined with customized data storage enables researchers to interactively explore genetic alterations across samples, genes, and pathways and, when available in the underlying data, to link these to clinical outcomes. The portal provides graphical summaries of gene-level data from multiple platforms, network visualization and analysis, survival analysis, patient-centric queries, and software programmatic access. The intuitive Web interface of the portal makes complex cancer genomics profiles accessible to researchers and clinicians without requiring bioinformatics expertise, thus facilitating biological discoveries. Here, we provide a practical guide to the analysis and visualization features of the cBioPortal for Cancer Genomics.
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            Genome-wide analysis of estrogen receptor binding sites.

            The estrogen receptor is the master transcriptional regulator of breast cancer phenotype and the archetype of a molecular therapeutic target. We mapped all estrogen receptor and RNA polymerase II binding sites on a genome-wide scale, identifying the authentic cis binding sites and target genes, in breast cancer cells. Combining this unique resource with gene expression data demonstrates distinct temporal mechanisms of estrogen-mediated gene regulation, particularly in the case of estrogen-suppressed genes. Furthermore, this resource has allowed the identification of cis-regulatory sites in previously unexplored regions of the genome and the cooperating transcription factors underlying estrogen signaling in breast cancer.
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              LncRNA-Dependent Mechanisms of Androgen Receptor-regulated Gene Activation Programs

              While recent studies indicated roles of long non-coding RNAs (lncRNAs) in physiologic aspects of cell-type determination and tissue homeostasis 1 yet their potential involvement in regulated gene transcription programs remain rather poorly understood. Androgen receptor (AR) regulates a large repertoire of genes central to the identity and behavior of prostate cancer cells 2 , and functions in a ligand-independent fashion in many prostate cancers when they become hormone refractory after initial androgen deprivation therapy 3 . Here, we report that two lncRNAs highly overexpressed in aggressive prostate cancer, PRNCR1 and PCGEM1, bind successively to the AR and strongly enhance both ligand-dependent and ligand-independent AR-mediated gene activation programs and proliferation in prostate cancer cells. Binding of PRNCR1 to the C-terminally acetylated AR on enhancers and its association with DOT1L appear to be required for recruitment of the second lncRNA, PCGEM1, to the DOT1L-mediated methylated AR N-terminus. Unexpectedly, recognition of specific protein marks by PCGEM1-recruited Pygopus2 PHD domain proves to enhance selective looping of AR-bound enhancers to target gene promoters in these cells. In “resistant” prostate cancer cells, these overexpressed lncRNAs can interact with, and are required for, the robust activation of both truncated and full length AR, causing ligand-independent activation of the AR transcriptional program and cell proliferation. Conditionally-expressed short hairpin RNA (shRNA) targeting of these lncRNAs in castration-resistant prostate cancer (CRPC) cell lines strongly suppressed tumor xenograft growth in vivo. Together, these results suggest that these overexpressed lncRNAs can potentially serve as a required component of castration-resistance in prostatic tumors.
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                Author and article information

                Journal
                Sci Adv
                Sci Adv
                SciAdv
                advances
                Science Advances
                American Association for the Advancement of Science
                2375-2548
                February 2019
                06 February 2019
                : 5
                : 2
                : eaav5590
                Affiliations
                [1 ]Laboratory of Molecular Medicine and Genomics, Department of Medicine, Surgery and Dentistry, “Scuola Medica Salernitana”, University of Salerno, Baronissi, SA, Italy.
                [2 ]Genomix4Life Srl, University of Salerno, Baronissi, SA, Italy.
                [3 ]Department of Experimental and Clinical Medicine, University “Magna Graecia”, Catanzaro (CZ), Italy.
                [4 ]Institute of Biomedicine, University of Turku, Turku, Finland.
                [5 ]Institute for Molecular Medicine, Biomedicum 2U, Helsinki, Finland.
                [6 ]Department of Immunology, Institute of Clinical Medicine, University of Oslo and Rikshospitalet Oslo, Oslo, Norway.
                [7 ]Institute of Biomedical Technologies, National Research Council, Segrate, MI, Italy.
                Author notes
                [*]

                These authors contributed equally to this work.

                [†]

                Present address: Helsinki Innovation Services Ltd., Helsinki, Finland.

                []Corresponding author. Email: aweisz@ 123456unisa.it (A.W.); ggiurato@ 123456unisa.it (G.G.)
                Author information
                http://orcid.org/0000-0001-7453-1240
                http://orcid.org/0000-0002-9601-2975
                http://orcid.org/0000-0001-9668-3632
                http://orcid.org/0000-0003-0793-7704
                http://orcid.org/0000-0002-6220-6229
                http://orcid.org/0000-0001-5290-2709
                http://orcid.org/0000-0002-6555-2362
                http://orcid.org/0000-0003-1783-5015
                http://orcid.org/0000-0003-4810-7862
                http://orcid.org/0000-0001-8787-5886
                http://orcid.org/0000-0002-1201-3939
                http://orcid.org/0000-0002-0538-8978
                http://orcid.org/0000-0003-0455-2083
                Article
                aav5590
                10.1126/sciadv.aav5590
                6365116
                30775443
                141aa33e-16af-44aa-aa94-f03ef5227571
                Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).

                This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license, which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.

                History
                : 27 September 2018
                : 21 December 2018
                Funding
                Funded by: doi http://dx.doi.org/10.13039/501100003407, Ministero dell’Istruzione, dell’Università e della Ricerca;
                Award ID: Flagship Project EPIGEN
                Funded by: doi http://dx.doi.org/10.13039/501100003407, Ministero dell’Istruzione, dell’Università e della Ricerca;
                Award ID: Flagship Project InterOmics
                Funded by: doi http://dx.doi.org/10.13039/501100005010, Associazione Italiana per la Ricerca sul Cancro;
                Award ID: IG-17426
                Funded by: doi http://dx.doi.org/10.13039/501100007065, Università degli Studi di Salerno;
                Award ID: Fondi FARB 2017-18
                Categories
                Research Article
                Research Articles
                SciAdv r-articles
                Cancer
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