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      Mitochondrial OXA Translocase Plays a Major Role in Biogenesis of Inner-Membrane Proteins

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          Summary

          The mitochondrial inner membrane harbors three protein translocases. Presequence translocase and carrier translocase are essential for importing nuclear-encoded proteins. The oxidase assembly (OXA) translocase is required for exporting mitochondrial-encoded proteins; however, different views exist about its relevance for nuclear-encoded proteins. We report that OXA plays a dual role in the biogenesis of nuclear-encoded mitochondrial proteins. First, a systematic analysis of OXA-deficient mitochondria led to an unexpected expansion of the spectrum of OXA substrates imported via the presequence pathway. Second, biogenesis of numerous metabolite carriers depends on OXA, although they are not imported by the presequence pathway. We show that OXA is crucial for the biogenesis of the Tim18-Sdh3 module of the carrier translocase. The export translocase OXA is thus required for the import of metabolite carriers by promoting assembly of the carrier translocase. We conclude that OXA is of central importance for the biogenesis of the mitochondrial inner membrane.

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          Highlights

          • Systematic search for substrates of mitochondrial inner-membrane OXA translocase

          • OXA translocase has different functions in presequence and carrier pathways

          • Many cleavable preproteins use the presequence translocase-OXA import-export pathway

          • OXA promotes carrier import via assembly of Tim18-Sdh3 module of carrier translocase

          Abstract

          Stiller et al. report that the sorting of many nuclear-encoded mitochondrial proteins depends on the OXA translocase, a homolog of bacterial YidC. The conservative sorting of transmembrane segments into the mitochondrial inner membrane is required for assembly of the carrier translocase and thus for the biogenesis of numerous metabolite carriers.

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          Most cited references22

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          Translocation of proteins into mitochondria.

          About 10% to 15% of the nuclear genes of eukaryotic organisms encode mitochondrial proteins. These proteins are synthesized in the cytosol and recognized by receptors on the surface of mitochondria. Translocases in the outer and inner membrane of mitochondria mediate the import and intramitochondrial sorting of these proteins; ATP and the membrane potential are used as energy sources. Chaperones and auxiliary factors assist in the folding and assembly of mitochondrial proteins into their native, three-dimensional structures. This review summarizes the present knowledge on the import and sorting of mitochondrial precursor proteins, with a special emphasis on unresolved questions and topics of current research.
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            Crystal structure of mitochondrial respiratory membrane protein complex II.

            The mitochondrial respiratory Complex II or succinate:ubiquinone oxidoreductase (SQR) is an integral membrane protein complex in both the tricarboxylic acid cycle and aerobic respiration. Here we report the first crystal structure of Complex II from porcine heart at 2.4 A resolution and its complex structure with inhibitors 3-nitropropionate and 2-thenoyltrifluoroacetone (TTFA) at 3.5 A resolution. Complex II is comprised of two hydrophilic proteins, flavoprotein (Fp) and iron-sulfur protein (Ip), and two transmembrane proteins (CybL and CybS), as well as prosthetic groups required for electron transfer from succinate to ubiquinone. The structure correlates the protein environments around prosthetic groups with their unique midpoint redox potentials. Two ubiquinone binding sites are discussed and elucidated by TTFA binding. The Complex II structure provides a bona fide model for study of the mitochondrial respiratory system and human mitochondrial diseases related to mutations in this complex.
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              Structural basis of Sec-independent membrane protein insertion by YidC.

              Newly synthesized membrane proteins must be accurately inserted into the membrane, folded and assembled for proper functioning. The protein YidC inserts its substrates into the membrane, thereby facilitating membrane protein assembly in bacteria; the homologous proteins Oxa1 and Alb3 have the same function in mitochondria and chloroplasts, respectively. In the bacterial cytoplasmic membrane, YidC functions as an independent insertase and a membrane chaperone in cooperation with the translocon SecYEG. Here we present the crystal structure of YidC from Bacillus halodurans, at 2.4 Å resolution. The structure reveals a novel fold, in which five conserved transmembrane helices form a positively charged hydrophilic groove that is open towards both the lipid bilayer and the cytoplasm but closed on the extracellular side. Structure-based in vivo analyses reveal that a conserved arginine residue in the groove is important for the insertion of membrane proteins by YidC. We propose an insertion mechanism for single-spanning membrane proteins, in which the hydrophilic environment generated by the groove recruits the extracellular regions of substrates into the low-dielectric environment of the membrane.
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                Author and article information

                Contributors
                Journal
                Cell Metab
                Cell Metab
                Cell Metabolism
                Cell Press
                1550-4131
                1932-7420
                10 May 2016
                10 May 2016
                : 23
                : 5
                : 901-908
                Affiliations
                [1 ]Institute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, University of Freiburg, 79104 Freiburg, Germany
                [2 ]Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany
                [3 ]Institute of Biology II, Biochemistry – Functional Proteomics, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany
                [4 ]BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg, Germany
                [5 ]Medical Biochemistry and Molecular Biology, Saarland University, 66421 Homburg, Germany
                Author notes
                [6]

                Co-first author

                [7]

                Present address: Department of Surgery, University of British Columbia, Vancouver, BC V5Z 1M9, Canada; Child and Family Research Institute, Vancouver, BC V5Z 4H4, Canada

                [8]

                Present address: Murdoch Childrens Research Institute, Royal Children’s Hospital and Department of Paediatrics, University of Melbourne, 3052 Melbourne, Australia

                [9]

                Present address: Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel

                Article
                S1550-4131(16)30156-5
                10.1016/j.cmet.2016.04.005
                4873616
                27166948
                14bffa51-defb-4386-9baf-9e94e89f7562
                © 2016 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 5 September 2015
                : 2 January 2016
                : 8 April 2016
                Categories
                Short Article

                Cell biology
                Cell biology

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