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      Trypanosoma brucei CYP51: Essentiality and Targeting Therapy in an Experimental Model

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          Abstract

          Trypanosoma brucei gambiense is the main causative agent of Human African Trypanosomiasis (HAT), also known as sleeping sickness. Because of limited alternatives and treatment toxicities, new therapeutic options are urgently needed for patients with HAT. Sterol 14alpha-demethylase (CYP51) is a potential drug target but its essentiality has not been determined in T. brucei. We used a tetracycline-inducible RNAi system to assess the essentiality of CYP51 in T. brucei bloodstream form (BSF) cells and we evaluated the effect of posaconazole, a well-tolerated triazole drug, within a panel of virulent strains in vitro and in a murine model. Expression of CYP51 in several T. brucei cell lines was demonstrated by western blot and its essentiality was demonstrated by RNA interference (CYP51 RNAi ) in vitro. Following reduction of Tb CYP51 expression by RNAi, cell growth was reduced and eventually stopped compared to WT or non-induced cells, showing the requirement of CYP51 in T. brucei. These phenotypes were rescued by addition of ergosterol. Additionally, CYP51 RNAi induction caused morphological defects with multiflagellated cells ( p<0.05), suggesting cytokinesis dysfunction. The survival of CYP51 RNAi Doxycycline-treated mice ( p = 0.053) and of CYP51 RNAi 5-day pre-induced Doxycycline-treated mice ( p = 0.008) were improved compared to WT showing a CYP51 RNAi effect on trypanosomal virulence in mice. The posaconazole concentrations that inhibited parasite growth by 50% (IC 50) were 8.5, 2.7, 1.6 and 0.12 μM for T. b. brucei 427 90–13, T. b. brucei Antat 1.1, T. b. gambiense Feo (Feo/ITMAP/1893) and T. b. gambiense Biyamina (MHOM/SD/82), respectively. During infection with these last three virulent strains, posaconazole-eflornithine and nifurtimox-eflornithine combinations showed similar improvement in mice survival ( p≤0.001). Our results provide support for a CYP51 targeting based treatment in HAT. Thus posaconazole used in combination may represent a therapeutic alternative for trypanosomiasis.

          Author Summary

          Human African trypanosomiasis (HAT), also known as sleeping sickness, is a parasitic disease exclusively located in sub-Saharan and southern Africa where it is transmitted by infected tsetse flies and is caused by a blood parasite named Trypanosoma brucei. Because of limited alternatives, toxicity and high expense new treatment options are urgently needed for patients with this deadly disease and related diseases. Sterols are important for building cell membranes and are precursors for the synthesis of powerful bioactive molecules, such as steroid hormones in mammals. Among the enzymes required for sterol production, one class (named CYP51), share similar functions and importantly these enzymes are found in all biological kingdoms, including in the sleeping sickness parasite. We have studied the role of trypanosome CYP51 and found that when native levels are diminished experimentally, parasite survival and division are radically diminished resulting in cell death but this can be rescued by the addition of ergosterol. We observed that parasites with diminished level of CYP51 enzyme were less virulent in mice. We also show that posaconazole, a clinically used antifungal and potential CYP51 inhibitor, augments parasite killing when used in combination with currently used trypanocidal drugs. Thus our results suggest that a specific targeting of the enzyme could be a potential strategy to treat HAT.

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          Most cited references82

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          A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei.

          First-generation inducible expression vectors for Trypanosoma brucei utilized a single tetracycline-responsive promoter to drive expression of an experimental gene, in tandem with a drug-resistance marker gene to select for integration (Wirtz E, Clayton CE. Science 1995; 268:1179-1183). Because drug resistance and experimental gene expression both depended upon the activity of the regulated promoter, this approach could not be used for inducible expression of toxic products. We have now developed a dual-promoter approach, for expressing highly toxic products and generating conditional gene knock-outs, using back-to-back constitutive T7 and tetracycline-responsive PARP promoters to drive expression of the selectable marker and test gene, respectively. Transformants are readily obtained with these vectors in the absence of tetracycline, in bloodstream or procyclic T. brucei cell lines co-expressing T7 RNA polymerase and Tet repressor, and consistently show tetracycline-responsive expression through a 10(3)-10(4)-fold range. Uninduced background expression of a luciferase reporter averages no more than one molecule per cell, enabling dominant-negative approaches relying upon inducible expression of toxic products. This tight regulation also permits the production of functional gene knock-outs through regulated expression of an experimental gene in a null-mutant background.
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            Continuous cultivation of Trypanosoma brucei blood stream forms in a medium containing a low concentration of serum protein without feeder cell layers.

            Blood stream forms (BSF) of Trypanosoma brucei brucei GUT at 3.1 were propagated in vitro in the absence of feeder layer cells at 37 C, using a modified Iscove's medium (HMI-18). The medium was supplemented with 0.05 mM bathocuproine sulfonate, 1.5 mM L-cysteine, 1 mM hypoxanthine, 0.2 mM 2-mercaptoethanol, 1 mM sodium pyruvate. 0.16 mM thymidine, and 20% (v/v) Serum Plus (SP) (Hazleton Biologics, Lenexa, Kansas). The latter contained a low level of serum proteins (13 micrograms/ml). Each primary culture was initiated by placing 3.5-4 x 10(6) BSFs isolated from infected mice in a flask containing 5 ml of the medium (HMI-9) supplemented with 10% fetal bovine serum (FBS) and 10% SP. The cultures were maintained by replacing the medium every 24 hr for 5-7 days. During this period, many BSFs died. However, from day 4 onward, long slender BSFs increased in number. On days 5-7, trypanosome suspensions were pooled and cell debris was removed by means of diethylaminoethyl cellulose (DE52) column chromatography. Blood stream forms then were collected by centrifugation, resuspended in fresh medium at 7-9 x 10(5)/ml, and transferred to new flasks. Subcultures were maintained by readjusting the BSF density to 7-9 x 10(5)/ml every 24 hr. Concentrations of FBS were reduced gradually at 5-7-day intervals by alternating the amounts of FBS and SP in HMI-9 with 5% FBS and 15% SP, with 2% FBS and 18% SP, and finally with 20% SP (HMI-18). By this method, 2-3 x 10(6) VSFs/ml were obtained consistently every 24 hr. for more than 80 days.(ABSTRACT TRUNCATED AT 250 WORDS)
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              High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome.

              African trypanosomes are major pathogens of humans and livestock and represent a model for studies of unusual protozoal biology. We describe a high-throughput phenotyping approach termed RNA interference (RNAi) target sequencing, or RIT-seq that, using Illumina sequencing, maps fitness-costs associated with RNAi. We scored the abundance of >90,000 integrated RNAi targets recovered from trypanosome libraries before and after induction of RNAi. Data are presented for 7435 protein coding sequences, >99% of a non-redundant set in the Trypanosoma brucei genome. Analysis of bloodstream and insect life-cycle stages and differentiated libraries revealed genome-scale knockdown profiles of growth and development, linking thousands of previously uncharacterized and "hypothetical" genes to essential functions. Genes underlying prominent features of trypanosome biology are highlighted, including the constitutive emphasis on post-transcriptional gene expression control, the importance of flagellar motility and glycolysis in the bloodstream, and of carboxylic acid metabolism and phosphorylation during differentiation from the bloodstream to the insect stage. The current data set also provides much needed genetic validation to identify new drug targets. RIT-seq represents a versatile new tool for genome-scale functional analyses and for the exploitation of genome sequence data.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                17 November 2016
                November 2016
                : 10
                : 11
                : e0005125
                Affiliations
                [1 ]University of Bordeaux, laboratoire de parasitologie, France
                [2 ]IRD-CIRAD-University of Bordeaux, France
                [3 ]University Hospital of Bordeaux, Department of infectious and tropical diseases, Hôpital Pellegrin, France
                [4 ]University of Bordeaux, Microbiologie Fondamentale et Pathogénicité, France
                [5 ]CNRS, Microbiologie Fondamentale et Pathogénicité, France
                [6 ]Bordeaux INP, ENSTBB, Microbiologie Fondamentale et Pathogénicité, France
                [7 ]University Hospital of Bordeaux, laboratoire de parasitologie, Hôpital Pellegrin, France
                Hunter College, CUNY, UNITED STATES
                Author notes

                I have read the journal's policy and the authors of this manuscript have the following competing interests: We thank Dr. Péré Perez Simarro and Jose Ramon Franco (World Health Organization) for the supply of eflornithine (ornidyl, Sanofi aventis) and nifurtimox (lampit, Bayer). Merck Sharp & Dohme Corp and Bayer provided posaconazole and nifurtimox respectively, for in vitro experimentation. The companies (Sanofi aventis, Bayer, Merck Sharp & Dohme Corp) did not play any additional role in the study aside from providing supplies.

                • Conceived and designed the experiments: FAD MB DD SD PV DRR.

                • Performed the experiments: FAD MB DD PC NL FL.

                • Analyzed the data: FAD MB PV DRR.

                • Contributed reagents/materials/analysis tools: PV DRR.

                • Wrote the paper: FAD MB PV DRR.

                Article
                PNTD-D-16-00870
                10.1371/journal.pntd.0005125
                5113867
                27855164
                166d2737-a736-41e2-83ec-b44a5a9ed85e
                © 2016 Dauchy et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 13 May 2016
                : 24 October 2016
                Page count
                Figures: 6, Tables: 1, Pages: 21
                Funding
                Funded by: This research was supported by internal funding and support from the ANR, LABEX ParaFrap, ANR-11-LABX-0024 and from the Association pour le développement de la recherche en parasitologie et médecine tropicale.
                Award Recipient :
                This research was supported by internal funding and support from the ANR, LABEX ParaFrap, ANR-11-LABX-0024 and from the Association pour le développement de la recherche en parasitologie et médecine tropicale. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Protozoans
                Parasitic Protozoans
                Trypanosoma
                Trypanosoma Brucei Gambiense
                Research and Analysis Methods
                Model Organisms
                Animal Models
                Mouse Models
                Medicine and Health Sciences
                Parasitic Diseases
                Biology and life sciences
                Genetics
                Epigenetics
                RNA interference
                Biology and life sciences
                Genetics
                Gene expression
                RNA interference
                Biology and life sciences
                Genetics
                Genetic interference
                RNA interference
                Biology and life sciences
                Biochemistry
                Nucleic acids
                RNA
                RNA interference
                Biology and Life Sciences
                Biochemistry
                Lipids
                Sterols
                Medicine and Health Sciences
                Tropical Diseases
                Neglected Tropical Diseases
                African Trypanosomiasis
                Medicine and Health Sciences
                Parasitic Diseases
                Protozoan Infections
                Trypanosomiasis
                African Trypanosomiasis
                Medicine and Health Sciences
                Infectious Diseases
                Zoonoses
                Trypanosomiasis
                African Trypanosomiasis
                Medicine and Health Sciences
                Parasitic Diseases
                Protozoan Infections
                Trypanosomiasis
                Medicine and Health Sciences
                Infectious Diseases
                Zoonoses
                Trypanosomiasis
                Biology and Life Sciences
                Cell Biology
                Cell Processes
                Cell Growth
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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