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      In situ mapping identifies distinct vascular niches for myelopoiesis

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          Summary

          In contrast to virtually all other tissues, the anatomy of differentiation in the bone marrow (BM) remains unknown. This is due to a lack of strategies to examine blood cell production in situ, which are required to understand differentiation, lineage commitment decisions, and define how spatial organizing cues inform tissue function. Here we developed approaches to image myelopoiesis and generated atlases of granulocyte and monocyte/dendritic cell differentiation. Granulopoiesis and dendritic/monopoiesis localize to different sinusoids and display lineage-specific spatial and clonal architectures. Acute systemic L. monocytogenes infection induces lineage-specific progenitor clusters through increased progenitor self-renewal, but the different lineages remain spatially separated. Monocyte dendritic cell progenitors (MDP) map with Ly6C lo monocytes and conventional dendritic cells; these localize to a subset of vessels expressing a major regulator of myelopoiesis 1 colony-stimulating-factor 1 (CSF1/ M-CSF). Specific deletion of Csf1 in endothelium disrupted the architecture around MDP and their localization to sinusoids. Subsequently, there were reduced MDP numbers and differentiation ability, and loss of Ly6C lo monocytes and dendritic cells during homeostasis and infection. These data indicate that local cues produced by distinct blood vessels are responsible for specific spatial organization of definitive hematopoiesis.

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          Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis.

          Mononuclear phagocytes, including monocytes, macrophages, and dendritic cells, contribute to tissue integrity as well as to innate and adaptive immune defense. Emerging evidence for labor division indicates that manipulation of these cells could bear therapeutic potential. However, specific ontogenies of individual populations and the overall functional organization of this cellular network are not well defined. Here we report a fate-mapping study of the murine monocyte and macrophage compartment taking advantage of constitutive and conditional CX(3)CR1 promoter-driven Cre recombinase expression. We have demonstrated that major tissue-resident macrophage populations, including liver Kupffer cells and lung alveolar, splenic, and peritoneal macrophages, are established prior to birth and maintain themselves subsequently during adulthood independent of replenishment by blood monocytes. Furthermore, we have established that short-lived Ly6C(+) monocytes constitute obligatory steady-state precursors of blood-resident Ly6C(-) cells and that the abundance of Ly6C(+) blood monocytes dynamically controls the circulation lifespan of their progeny. Copyright © 2013 Elsevier Inc. All rights reserved.
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            The bone marrow microenvironment at single-cell resolution

            The molecular complexity of the bone marrow (BM) microenvironment and its response to stress are incompletely understood, despite its key role in the regulation of hematopoiesis. Here we map the transcriptional landscape of BM vascular, perivascular, and osteoblast niche populations at single-cell resolution at both homeostasis and under stress hematopoiesis. This analysis revealed a previously unappreciated level of cellular heterogeneity within the BM niche, identified novel cellular subsets, and resolved cellular sources of pro-hematopoietic growth factors, chemokines, and membrane-bound ligands. Under conditions of stress, our studies revealed a significant transcriptional remodeling of these niche elements, including an adipocytic skewing of the perivascular cells. Among the stress-induced changes, we observed that vascular Notch ligand delta-like ligands ( Dll1,4 ) were downregulated. In the absence of vascular Dll4, hematopoietic stem cells (HSC) prematurely induced a myeloid transcriptional program. These findings refine our understanding of the cellular architecture of the BM niche, reveal a dynamic and heterogeneous molecular landscape that is highly sensitive to stress, and illustrate the utility of single cell transcriptomic data in systematically evaluating the regulation of hematopoiesis by discrete niche populations.
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              Data clustering: a review

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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                23 February 2021
                10 February 2021
                February 2021
                10 August 2021
                : 590
                : 7846
                : 457-462
                Affiliations
                [1. ]Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Medical center, Cincinnati, Ohio, 25228, USA
                [2. ]Division of Infectious Diseases, Center for Inflammation and Tolerance, Cincinnati Children’s Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, Ohio, 45229, USA.
                [3. ]Division of Immunobiology and Center for Systems Immunology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, 45229, USA
                [4. ]Immunology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA.
                [5. ]Department of Biochemistry and Molecular Genetics, University of Colorado Denver – Anschutz Medical Campus, Aurora, Colorado, 80045, USA
                [6. ]Department of Cell and Developmental Biology. University of Michigan Medical School. Ann Arbor, MI, 48109, USA
                [7. ]Department of Biochemistry and Structural Biology, University of Texas Health Science Center, San Antonio, Texas, 78229, USA
                [8. ]Division of Developmental Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, 45229, USA
                [9. ]Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, 45229, USA
                [10. ]Brain Tumor Center. Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Medical Center, Cincinnati, Ohio, 45229, USA
                [11. ]Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, 45229, USA
                Author notes
                [*]

                Equal contribution

                Author contributions

                D.L conceptualized and managed the study. D.L., J.Z., H.L.G., N.S., J.D.E., J.M.K, A.D., S.S.W., and Q.W. designed experiments. J.Z. and Q.W. developed all the stains to analyze myelopoiesis in situ and performed most of the image analyses. C.B.J., A.S., M.M., and B.W. mapped hematopoietic cells for random simulations. G.P., and J.M.K., infected mice with L. monocytogenes. J.Z., Q.W., and A.O., performed FACS analyses. J.X.J generated the Csf1 fl/fl mice. N.S., V.B.S.P., and L.F.H. performed bioinformatics analyses. D.L., J.Z., and Q.W., assembled the figures and wrote the manuscript with editorial input from all the authors.

                Article
                NIHMS1658013
                10.1038/s41586-021-03201-2
                8020897
                33568812
                16bde328-98c5-459c-b9ac-074bb57c6515

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