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      Chemical mimetics of the N-degron pathway alleviate systemic inflammation by activating mitophagy and immunometabolic remodeling

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          Abstract

          The Arg/N-degron pathway, which is involved in the degradation of proteins bearing an N-terminal signal peptide, is connected to p62/SQSTM1-mediated autophagy. However, the impact of the molecular link between the N-degron and autophagy pathways is largely unknown in the context of systemic inflammation. Here, we show that chemical mimetics of the N-degron Nt-Arg pathway (p62 ligands) decreased mortality in sepsis and inhibited pathological inflammation by activating mitophagy and immunometabolic remodeling. The p62 ligands alleviated systemic inflammation in a mouse model of lipopolysaccharide (LPS)-induced septic shock and in the cecal ligation and puncture model of sepsis. In macrophages, the p62 ligand attenuated the production of proinflammatory cytokines and chemokines in response to various innate immune stimuli. Mechanistically, the p62 ligand augmented LPS-induced mitophagy and inhibited the production of mitochondrial reactive oxygen species in macrophages. The p62 ligand-mediated anti-inflammatory, antioxidative, and mitophagy-activating effects depended on p62. In parallel, the p62 ligand significantly downregulated the LPS-induced upregulation of aerobic glycolysis and lactate production. Together, our findings demonstrate that p62 ligands play a critical role in the regulation of inflammatory responses by orchestrating mitophagy and immunometabolic remodeling.

          Sepsis: chemical modulation of selective autophagy alleviates systemic inflammation

          Sepsis is a life-threatening condition that occurs when the body’s response to infection damages its own organs. Autophagy protects the body by degrading harmful materials in the cell using the lysosome. It has been an outstanding question whether autophagy can fight systemic inflammation in sepsis. Researchers in South Korea led by Eun-Kyeong Jo at Chungnam National University and Yong Tae Kwon at Seoul National University developed small molecule chemicals that target the autophagic receptor p62/SQSTSM-1/Sequestosome-1 to induce therapeutic efficacy during septic responses. In a mouse model of septic shock, these orally administrative compounds halted the production of proinflammatory molecules and reduced oxidative stress in mitochondria by facilitating the autophagic turnover of damaged mitochondria. Chemical modulation of p62 is now emerging as a therapeutic strategy to treat sepsis responsible for 11 million deaths a year.

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          Fast gapped-read alignment with Bowtie 2.

          As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the approach is ill-suited to finding longer, gapped alignments. Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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            The NLRP3 inflammasome: molecular activation and regulation to therapeutics

            NLRP3 (NACHT, LRR and PYD domains-containing protein 3) is an intracellular sensor that detects a broad range of microbial motifs, endogenous danger signals and environmental irritants, resulting in the formation and activation of the NLRP3 inflammasome. Assembly of the NLRP3 inflammasome leads to caspase-1-dependent release of the proinflammatory cytokines, IL-1β and IL-18, as well as to gasdermin D-mediated pyroptotic cell death. Recent studies have revealed new regulators of the NLRP3 inflammasome, including new interacting or regulatory proteins, metabolic pathways and a regulatory mitochondrial hub. In this Review, we present the molecular, cell biological and biochemical basis of NLRP3 activation and regulation, and describe how this mechanistic understanding is leading to potential therapeutics that target the NLRP3 inflammasome.
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              Succinate is an inflammatory signal that induces IL-1β through HIF-1α.

              Macrophages activated by the Gram-negative bacterial product lipopolysaccharide switch their core metabolism from oxidative phosphorylation to glycolysis. Here we show that inhibition of glycolysis with 2-deoxyglucose suppresses lipopolysaccharide-induced interleukin-1β but not tumour-necrosis factor-α in mouse macrophages. A comprehensive metabolic map of lipopolysaccharide-activated macrophages shows upregulation of glycolytic and downregulation of mitochondrial genes, which correlates directly with the expression profiles of altered metabolites. Lipopolysaccharide strongly increases the levels of the tricarboxylic-acid cycle intermediate succinate. Glutamine-dependent anerplerosis is the principal source of succinate, although the 'GABA (γ-aminobutyric acid) shunt' pathway also has a role. Lipopolysaccharide-induced succinate stabilizes hypoxia-inducible factor-1α, an effect that is inhibited by 2-deoxyglucose, with interleukin-1β as an important target. Lipopolysaccharide also increases succinylation of several proteins. We therefore identify succinate as a metabolite in innate immune signalling, which enhances interleukin-1β production during inflammation.
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                Author and article information

                Contributors
                yok5@snu.ac.kr
                hayoungj@cnu.ac.kr
                Journal
                Exp Mol Med
                Exp Mol Med
                Experimental & Molecular Medicine
                Nature Publishing Group UK (London )
                1226-3613
                2092-6413
                1 February 2023
                1 February 2023
                February 2023
                : 55
                : 2
                : 333-346
                Affiliations
                [1 ]GRID grid.254230.2, ISNI 0000 0001 0722 6377, Department of Microbiology, , Chungnam National University School of Medicine, ; Daejeon, 35015 Republic of Korea
                [2 ]GRID grid.254230.2, ISNI 0000 0001 0722 6377, Infection Control Convergence Research Center, , Chungnam National University School of Medicine, ; Daejeon, 35015 Republic of Korea
                [3 ]GRID grid.254230.2, ISNI 0000 0001 0722 6377, Department of Medical Science, , Chungnam National University School of Medicine, ; Daejeon, 35015 Republic of Korea
                [4 ]GRID grid.31501.36, ISNI 0000 0004 0470 5905, Cellular Degradation Biology Center and Department of Biomedical Sciences, College of Medicine, , Seoul National University, ; Seoul, 03080 Republic of Korea
                [5 ]GRID grid.412091.f, ISNI 0000 0001 0669 3109, Department of Microbiology, , Keimyung University School of Medicine, ; Daegu, Republic of Korea
                [6 ]GRID grid.254230.2, ISNI 0000 0001 0722 6377, Department of Biochemistry, , Chungnam National University School of Medicine, ; Daejeon, 35015 Republic of Korea
                [7 ]GRID grid.258803.4, ISNI 0000 0001 0661 1556, School of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, , Kyungpook National University, ; Daegu, 41566 Republic of Korea
                [8 ]GRID grid.410885.0, ISNI 0000 0000 9149 5707, Bio-Electron Microscopy Research Center (104 Dong), , Korea Basic Science Institute, ; Ochang, Cheongju 28199 Republic of Korea
                [9 ]GRID grid.254230.2, ISNI 0000 0001 0722 6377, Department of Pathology, , Chungnam National University School of Medicine, ; Daejeon, 35015 Republic of Korea
                [10 ]AUTOTAC Bio Inc., Changkyunggung-ro 254, Jongno-gu, Seoul, 03077 Republic of Korea
                [11 ]GRID grid.31501.36, ISNI 0000 0004 0470 5905, SNU Dementia Research Center, College of Medicine, , Seoul National University, ; Seoul, 03080 Republic of Korea
                [12 ]GRID grid.31501.36, ISNI 0000 0004 0470 5905, Ischemic/Hypoxic Disease Institute and SNU Dementia Research Center, College of Medicine, , Seoul National University, ; Seoul, 03080 Republic of Korea
                Author information
                http://orcid.org/0000-0002-8332-024X
                http://orcid.org/0000-0002-0859-0063
                http://orcid.org/0000-0002-8115-3150
                http://orcid.org/0000-0001-7191-0587
                Article
                929
                10.1038/s12276-023-00929-x
                9981610
                36720915
                17fdadb0-6383-4844-a49d-9deb6aeeee3b
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 18 July 2022
                : 19 October 2022
                : 4 November 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100003725, National Research Foundation of Korea (NRF);
                Award ID: 2017R1A5A2015385
                Award ID: 2019R1A2C1087686
                Award ID: 2020R1A5A1019023
                Award ID: 2021R1A2B5B03002614
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100003716, Korea Basic Science Institute (KBSI);
                Award ID: C140440
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100004332, Seoul National University Hospital (SNUH);
                Categories
                Article
                Custom metadata
                © The Author(s) 2023

                Molecular medicine
                sepsis,mitophagy
                Molecular medicine
                sepsis, mitophagy

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