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      Cystatin M/E Variant Causes Autosomal Dominant Keratosis Follicularis Spinulosa Decalvans by Dysregulating Cathepsins L and V

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          Abstract

          Keratosis follicularis spinulosa decalvans (KFSD) is a rare cornification disorder with an X-linked recessive inheritance in most cases. Pathogenic variants causing X-linked KFSD have been described in MBTPS2, the gene for a membrane-bound zinc metalloprotease that is involved in the cleavage of sterol regulatory element binding proteins important for the control of transcription. Few families have been identified with an autosomal dominant inheritance of KFSD. We present two members of an Austrian family with a phenotype of KFSD, a mother and her son. The disease was not observed in her parents, pointing to a dominant inheritance with a de novo mutation in the index patient. Using whole-exome sequencing, we identified a heterozygous missense variant in CST6 in DNA samples from the index patient and her affected son. In line with family history, the variant was not present in samples from her parents. CST6 codes for cystatin M/E, a cysteine protease inhibitor. Patient keratinocytes showed increased expression of cathepsin genes CTSL and CTSV and reduced expression of transglutaminase genes TGM1 and TGM3. A relative gain of active, cleaved transglutaminases was found in patient keratinocytes compared to control cells. The variant found in CST6 is expected to affect protein targeting and results in marked disruption of the balance between cystatin M/E activity and its target proteases and eventually transglutaminases 1 and 3. This disturbance leads to an impairment of terminal epidermal differentiation and proper hair shaft formation seen in KFSD.

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          Proteomics. Tissue-based map of the human proteome.

          Resolving the molecular details of proteome variation in the different tissues and organs of the human body will greatly increase our knowledge of human biology and disease. Here, we present a map of the human tissue proteome based on an integrated omics approach that involves quantitative transcriptomics at the tissue and organ level, combined with tissue microarray-based immunohistochemistry, to achieve spatial localization of proteins down to the single-cell level. Our tissue-based analysis detected more than 90% of the putative protein-coding genes. We used this approach to explore the human secretome, the membrane proteome, the druggable proteome, the cancer proteome, and the metabolic functions in 32 different tissues and organs. All the data are integrated in an interactive Web-based database that allows exploration of individual proteins, as well as navigation of global expression patterns, in all major tissues and organs in the human body. Copyright © 2015, American Association for the Advancement of Science.
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            Analyzing real-time PCR data by the comparative C(T) method.

            Two different methods of presenting quantitative gene expression exist: absolute and relative quantification. Absolute quantification calculates the copy number of the gene usually by relating the PCR signal to a standard curve. Relative gene expression presents the data of the gene of interest relative to some calibrator or internal control gene. A widely used method to present relative gene expression is the comparative C(T) method also referred to as the 2 (-DeltaDeltaC(T)) method. This protocol provides an overview of the comparative C(T) method for quantitative gene expression studies. Also presented here are various examples to present quantitative gene expression data using this method.
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              Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.

              Global classification of the human proteins with regards to spatial expression patterns across organs and tissues is important for studies of human biology and disease. Here, we used a quantitative transcriptomics analysis (RNA-Seq) to classify the tissue-specific expression of genes across a representative set of all major human organs and tissues and combined this analysis with antibody-based profiling of the same tissues. To present the data, we launch a new version of the Human Protein Atlas that integrates RNA and protein expression data corresponding to ∼80% of the human protein-coding genes with access to the primary data for both the RNA and the protein analysis on an individual gene level. We present a classification of all human protein-coding genes with regards to tissue-specificity and spatial expression pattern. The integrative human expression map can be used as a starting point to explore the molecular constituents of the human body.
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                Author and article information

                Contributors
                Journal
                Front Genet
                Front Genet
                Front. Genet.
                Frontiers in Genetics
                Frontiers Media S.A.
                1664-8021
                12 July 2021
                2021
                : 12
                : 689940
                Affiliations
                [1] 1Department of Biology, Edge Hill University , Ormskirk, United Kingdom
                [2] 2Department of Dermatology, Medical University of Innsbruck , Innsbruck, Austria
                [3] 3Department of Biological and Geographical Sciences, University of Huddersfield , Huddersfield, United Kingdom
                [4] 4Institute of Human Genetics, Medical University of Innsbruck , Innsbruck, Austria
                [5] 5Cologne Center for Genomics, Faculty of Medicine and Cologne University Hospital, University of Cologne , Cologne, Germany
                Author notes

                Edited by: Tommaso Pippucci, Unità Genetica Medica, Policlinico Sant’Orsola-Malpighi, Italy

                Reviewed by: Caterina Marconi, Hôpitaux Universitaires de Genève, Switzerland; Xuanye Cao, Baylor College of Medicine, United States

                *Correspondence: Hans Christian Hennies, h.c.hennies@ 123456hud.ac.uk

                These authors have contributed equally to this work

                This article was submitted to Genetics of Common and Rare Diseases, a section of the journal Frontiers in Genetics

                Article
                10.3389/fgene.2021.689940
                8312243
                34322157
                17ff4b5c-18cd-42a9-a351-32cf65f975c9
                Copyright © 2021 Eckl, Gruber, Brennan, Marriott, Plank, Moosbrugger-Martinz, Blunder, Schossig, Altmüller, Thiele, Nürnberg, Zschocke, Hennies and Schmuth.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 01 April 2021
                : 16 June 2021
                Page count
                Figures: 3, Tables: 0, Equations: 0, References: 27, Pages: 7, Words: 0
                Categories
                Genetics
                Original Research

                Genetics
                keratosis follicularis spinulosa decalvans,congenital disorder of cornification,cicatricial alopecia,cystatin,transglutaminase,epidermal differentiation,cathepsin

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