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      Limitations of discrete-time approaches to continuous-time contagion dynamics

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      1,2 , 1 , 1
      Physical Review. E
      American Physical Society

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          Abstract

          Continuous-time Markov process models of contagions are widely studied, not least because of their utility in predicting the evolution of real-world contagions and in formulating control measures. It is often the case, however, that discrete-time approaches are employed to analyze such models or to simulate them numerically. In such cases, time is discretized into uniform steps and transition rates between states are replaced by transition probabilities. In this paper, we illustrate potential limitations to this approach. We show how discretizing time leads to a restriction on the values of the model parameters that can accurately be studied. We examine numerical simulation schemes employed in the literature, showing how synchronous-type updating schemes can bias discrete-time formalisms when compared against continuous-time formalisms. Event-based simulations, such as the Gillespie algorithm, are proposed as optimal simulation schemes both in terms of replicating the continuous-time process and computational speed. Finally, we show how discretizing time can affect the value of the epidemic threshold for large values of the infection rate and the recovery rate, even if the ratio between the former and the latter is small.

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          Author and article information

          Journal
          Phys Rev E
          Phys Rev E
          PRE
          PLEEE8
          Physical Review. E
          American Physical Society
          2470-0045
          2470-0053
          November 2016
          16 November 2016
          16 November 2016
          : 94
          : 5
          : 052125
          Affiliations
          [ 1 ]MACSI, Department of Mathematics and Statistics, University of Limerick , Ireland
          [ 2 ]Information Sciences Institute , University of Southern California, Marina del Rey, California 90291, USA
          Article
          10.1103/PhysRevE.94.052125
          7217503
          27967171
          185bc182-577e-4129-bf3e-d3b7eff7afa5
          ©2016 American Physical Society

          This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the COVID-19 pandemic or until permissions are revoked in writing. Upon expiration of these permissions, PMC is granted a perpetual license to make this article available via PMC and Europe PMC, consistent with existing copyright protections.

          History
          : 4 March 2016
          Page count
          Pages: 9
          Funding
          Funded by: Science Foundation Ireland http://dx.doi.org/10.13039/501100001602 SFI http://sws.geonames.org/2963597/
          Award ID: 11/PI/1026
          Award ID: 12/PI/1683
          Funded by: James S. McDonnell Foundation http://dx.doi.org/10.13039/100000913 JSMF http://sws.geonames.org/6252001/ http://sws.geonames.org/4398678/
          Funded by: Seventh Framework Programme http://dx.doi.org/10.13039/501100004963 European Union Seventh Framework Programme EU Seventh Framework Programme European Commission Seventh Framework Programme EC Seventh Framework Programme FP7 http://sws.geonames.org/2802361/
          Award ID: 317614
          Categories
          Articles
          Statistical Physics

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