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      A Comprehensive Assessment of Lymphatic Filariasis in Sri Lanka Six Years after Cessation of Mass Drug Administration

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          Abstract

          Background

          The Sri Lankan Anti-Filariasis Campaign conducted 5 rounds of mass drug administration (MDA) with diethycarbamazine plus albendazole between 2002 and 2006. We now report results of a comprehensive surveillance program that assessed the lymphatic filariasis (LF) situation in Sri Lanka 6 years after cessation of MDA.

          Methodology and Principal Findings

          Transmission assessment surveys (TAS) were performed per WHO guidelines in primary school children in 11 evaluation units (EUs) in all 8 formerly endemic districts. All EUs easily satisfied WHO criteria for stopping MDA. Comprehensive surveillance was performed in 19 Public Health Inspector (PHI) areas (subdistrict health administrative units). The surveillance package included cross-sectional community surveys for microfilaremia (Mf) and circulating filarial antigenemia (CFA), school surveys for CFA and anti-filarial antibodies, and collection of Culex mosquitoes with gravid traps for detection of filarial DNA (molecular xenomonitoring, MX). Provisional target rates for interruption of LF transmission were community CFA <2%, antibody in school children <2%, and filarial DNA in mosquitoes <0.25%. Community Mf and CFA prevalence rates ranged from 0–0.9% and 0–3.4%, respectively. Infection rates were significantly higher in males and lower in people who denied prior treatment. Antibody rates in school children exceeded 2% in 10 study sites; the area that had the highest community and school CFA rates also had the highest school antibody rate (6.9%). Filarial DNA rates in mosquitoes exceeded 0.25% in 10 PHI areas.

          Conclusions

          Comprehensive surveillance is feasible for some national filariasis elimination programs. Low-level persistence of LF was present in all study sites; several sites failed to meet provisional endpoint criteria for LF elimination, and follow-up testing will be needed in these areas. TAS was not sensitive for detecting low-level persistence of filariasis in Sri Lanka. We recommend use of antibody and MX testing as tools to complement TAS for post-MDA surveillance.

          Author Summary

          Lymphatic Filariasis (LF, also known as “elephantiasis”) is a disabling and deforming disease that is caused by parasitic worms that are transmitted by mosquitoes. The Sri Lankan Anti-Filariasis Campaign provided five annual rounds of mass drug administration (MDA) with diethylcarbamazine and albendazole between 2002 and 2006 in all endemic areas (districts or implementation units), and this reduced infection rates to very low levels in all sentinel and spot check sites. Transmission Assessment Surveys (TAS, surveys for filarial antigenemia in primary school children) performed in 2012–2013 (about 6 years after the last round of MDA) showed that all 11 evaluation units in formerly endemic areas easily satisfied a key World Health Organization target for LF elimination programs. More comprehensive surveillance was performed with other tests to assess LF parameters in 19 study sites in the same eight districts. We detected evidence of persistent LF in all districts and evidence of ongoing transmission in several areas. Exposure monitoring (screening for anti-filarial antibodies in primary school children) and molecular xenomonitoring (detecting filarial DNA in mosquito vectors) were much more sensitive than TAS for detecting low level persistence of filariasis in Sri Lanka. These methods are complementary to TAS, and they are feasible for use by some national filariasis elimination programs. Results from this study suggest that TAS alone may not be sufficient for assessing the success of filariasis elimination programs.

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          The ICT Filariasis Test: A rapid-format antigen test for diagnosis of bancroftian filariasis.

          Antigen testing is now recognized as the method of choice for detection of Wuchereria bancrofti infections. Unlike tests that detect microfilariae, antigen tests can be performed with blood collected during the day or night. However, existing enzyme-linked immunosorbent assay (ELISA) tests for filarial antigenemia are difficult to perform in the field, and this has limited their use in endemic countries. In this article, Gary Weil, Patrick Lammie and Niggi Weiss review their experience with a new rapid-format filarial antigen test. They found that the ICT card test was very easy to perform and that it was comparable with ELISA for the detection of filarial antigen in sera from people with microfilaremia. The introduction now of an antigen test suitable for use in the field is especially timely, in that it may facilitate implementation of new strategies proposed by the World Health Organization for control and elimination of lymphatic filariasis.
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            Effect of yearly mass drug administration with diethylcarbamazine and albendazole on bancroftian filariasis in Egypt: a comprehensive assessment.

            Egypt was one of the first countries to implement a national programme to eliminate lymphatic filariasis based on WHO's strategy of repeated rounds of mass drug administration (MDA) with diethylcarbamazine and albendazole (target population, 2.5 million in 181 localities). We assessed the effect of five yearly rounds of MDA on filariasis in four sentinel villages in Egypt. We studied two areas with different infection rates before MDA: the Qalubyia study area had a low infection rate because of previous treatment with diethylcarbamazine; this was typical of most filariasis-endemic villages in Egypt before MDA. The Giza study area had a high baseline infection rate. We undertook repeated surveys in villages for treatment compliance and tests for microfilaraemia and circulating filarial antigenaemia, antibodies to filarial antigen Bm14 in schoolchildren, and infections in indoor-resting mosquitoes (assessed by PCR). MDA compliance rates were excellent (>80%). In Giza after MDA, prevalence rates of microfilaraemia and circulating filarial antigenaemia fell from 11.5% to 1.2%, and from 19.0% to 4.8%, respectively (p<0.0001). Corresponding rates in Qalubyia fell from 3.1% to 0% and 13.6% to 3.1%, respectively (p<0.0001). Rates of antifilarial antibody and circulating filarial antigenaemia in schoolchildren (aged about 7-8 years), fell from 18.3% to 0.2% (p<0.0001) and from 10.0% to 0.4% (p<0.0001) in Giza, respectively, and from 1.7% to 0% and 1.7% to 0% (both p=0.13) in Qalubyia, respectively. Mosquito infection rates fell from 3.07% (95% CI 2.38-3.88) to 0.19% (0.08-0.38) in Giza and from 4.37% (3.07-5.99) to 0% (0-0.05) in Qalubyia. MDA greatly affects variables related to infection (microfilaraemia and circulating filarial antigenaemia prevalence rates) and transmission (antifilarial antibodies in young children and mosquito infection rates). Our results suggest that after five rounds of MDA filariasis is likely to have been eliminated in most endemic localities in Egypt.
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              A Multicenter Evaluation of Diagnostic Tools to Define Endpoints for Programs to Eliminate Bancroftian Filariasis

              Introduction In 2000 the Global Programme to Eliminate Lymphatic Filariasis (GPELF) was launched, providing antifilarial drugs to millions of people through mass drug administration (MDA) programs. During the GPELF's first nine years over 2.6 billion treatments of antifilarial drugs were given to people in 48 countries through MDA programs [1]. The success of the GPELF has led to dramatic reductions of both microfilaremia and antigenemia levels in countries that have completed multiple rounds of MDA [2]; the challenge now is to determine when it is most appropriate to stop MDA [3]. The decision to stop MDA is complicated and a variety of tools have been suggested to guide the decision [4]. The first step is to define the parameter(s) that will be measured and the best diagnostic tool for assessing it. At least seven diagnostic tests are currently available for detecting indicators of LF exposure and infection. Selection of the best diagnostic test for use in stopping-MDA decisions requires consideration of each test's accuracy, technical requirements, programmatic feasibility and reliability [5], as well as confidence in test performance, especially since there is no single gold standard test for LF (see Discussion). Next, following the selection of a preferred diagnostic tool for defining the end-point of MDA, the question of how best to sample the population must be resolved. In response to these and other challenges, this study was planned to evaluate diagnostic tools to assess MDA program success by standardizing the tools now available, comparing their effectiveness in demonstrating the interruption of LF transmission, and selecting the most effective for deciding when MDA can be suspended [6]. A large multi-country study was conducted in 2007–2008 to compare the effectiveness of seven available diagnostic tests for detecting evidence of Wuchereria bancrofti infection or transmission following multiple rounds of MDA, in settings where infection prevalence was likely to be low. The goal of the study was to select the best diagnostic tool(s) that would allow for definition of program end-points that will maximize the likelihood that LF transmission has been interrupted. Such a tool(s) would be the cornerstone of programmatic decision-making. Methods Site Selection Studies were performed in French Polynesia, Ghana, Haiti, Sri Lanka, Zanzibar (United Republic of Tanzania) and Tuvalu, representing a broad diversity of settings in which LF is present. The study sites were believed to have low residual microfilaremia prevalence rates in the range of 0.5–2% following at least five rounds of MDA [7]. Participant Selection One community survey and one school survey were performed in each country. Community surveys sampled residents of selected households between the ages of 3 and 80. School surveys were performed in primary schools that serve children in the same villages as those selected for the community surveys. First and fourth year students (approximately 6 and 10 years old, respectively) were selected for inclusion in the school surveys. Children from the school survey were excluded if they had already been included in the community survey. Since the primary objective of this first phase of research was not to assess program end-points in the specific study sites, but rather to compare test effectiveness in the same groups of individuals late in program activities, convenience sampling was used to select both communities and schools. However, selection of participants within each site was conducted randomly whenever possible. Standard Operating Procedures A workshop with all the investigators was held in Atlanta, GA to establish the study protocols and Standard Operating Procedures (SOP) [7] prior to the start of the study. For each country, a team of experienced investigators traveled to the study site to train the local team on data collection methods and laboratory procedures in accordance with the SOP. Demographic Data Collection All information on the participants was collected using handheld personal digital assistants (PDA) (Dell Axim X50 or X51) that eliminated the need for paper records. Unique identifiers were printed on labels which provided visual identification of the number as well as barcodes acquired by a Bluetooth® scanner (CHS 7p v.1, Socket Mobile) to facilitate specimen management. The PDAs were equipped with GPS devices (GlobalSat, City of Industry, CA, USA) and GPS coordinates were captured at each house and school visited. A questionnaire was administered to collect demographic information that included age, gender, bednet use, self-reported filarial disease status and compliance with the most recent MDA. Multiple teams could register households at the same time, and data collected could be synchronized in the field to create one master database. Each night all data were uploaded to a field laptop and a backup of the data was created on an external drive. Data were electronically transmitted in the form of encrypted excel files to the central analysis database at the Task Force for Global Health (Atlanta, GA). Blood and Urine Collection All field sample collections and field and laboratory tests were conducted according to the SOP. Blood and urine samples were collected 6–24 months following the last MDA. The periodicity of W. bancrofti required that blood collection in the community surveys be performed during the peak hours of microfilaremia (during daytime hours for French Polynesia and Tuvalu and between 10 pm and 2 am in the remaining countries where the parasite was nocturnally periodic). In the areas with nocturnal periodicity, collection teams had the option of registering households during the day or night. Teams that registered households during the day later returned in the evening to take the blood samples. Approximately 0.3–0.4 ml of blood was collected by finger prick from each participant into an EDTA coated blood collection tube and stored in coolers overnight before assays were performed the next day in the field laboratory. Up to six diagnostic assays were performed (with the exception of Ghana, which conducted up to five assays). Three of the assays were conducted in the field laboratory: blood smear (MF), ICT (Immunochromatographic test, Binax, Scarborough, ME), and the PanLF Rapid (MBDr, Selangor, Malaysia). The one exception to this was French Polynesia where the blood smear, ICT and PanLF assays were processed at the Institut Louis Malardé. The Bm14 antibody detection and Og4C3 antigen detection assays were conducted in five reference laboratories (see Table 1) and the PCR (Polymerase Chain Reaction) tests were conducted at Smith College in Northampton, MA, USA. 10.1371/journal.pntd.0001479.t001 Table 1 Laboratory locations of diagnostic tests. Bm14 PanLF Urine SXP ICT Og4C3 Blood Smear PCR* French Polynesia ILM ILM Aichi ILM ILM ILM Smith Ghana Noguchi – – Field lab Noguchi Field lab Smith Haiti CDC Field lab Aichi Field lab CDC Field lab Smith Sri Lanka Wash U. Field lab – Field lab Wash U. Field lab Wash U. Tuvalu Wash U. Field lab Aichi Field lab Smith Field lab Smith Zanzibar Smith Field lab Aichi Field lab Smith Field lab Smith Aichi = Aichi Medical University (Japan). CDC = Centers for Disease Control and Prevention (USA). Field Lab = in-country laboratory created, or in use, by field team. ILM = Institut Louis Malarde (French Polynesia). Noguchi = Noguchi Memorial Institute for Medical Research (Ghana). Smith = Smith College (USA). Wash U = Washington University in St. Louis, Missouri (USA). *Based on 10 µl blood specimen. For school participants, four diagnostic assays were performed: two conducted on site (ICT and PanLF) and two conducted in reference laboratories (Bm14 and Og4C3). Because microfilaremia levels were not assessed in the school surveys, blood collection occurred during the day at the time of registration. Urine cups were labeled and distributed at the time of enrollment, and each participant was asked to provide a urine sample (with the exception of those in Ghana and Sri Lanka). In the field laboratory, approximately 5 ml of urine was transferred into a smaller vial and sodium azide (0.1%) was added as a preservative [8]. Urine vials were shipped to Aichi Medical University (Nagoya, Japan) for anti-filarial antibody testing using the W. bancrofti SXP recombinant antigen. Table 2 summarizes the tests by: survey, specimen, test type, and target detected. 10.1371/journal.pntd.0001479.t002 Table 2 Diagnostic test characteristics. Test Name Surveys Used Specimen Type Test Type Target Detected Bm14 Community & School Bloodspot ELISA Antifilarial antibody PanLF Community & School Blood Rapid cassette test Antifilarial antibody Urine SXP Community & School Urine ELISA Antifilarial antibody ICT Community & School Blood Rapid card test Filarial-antigen Og4C3 Community & School Bloodspot ELISA Filarial-antigen Blood Smear Community 60 µl Blood Blood film Microfilariae PCR * Community 10 µl Bloodspot qPCR Microfilariae *Based on 10 µl blood specimen. Field Tests Blood films were used to determine MF levels in the communities. Sixty microliters of blood was streaked onto a glass slide (3 lines×20 µl), stained with Giemsa and read in the field laboratories. Filarial-antigen status was determined by ICT (Binax, Scarborough, ME, USA). EDTA anti-coagulated blood was used and the test was performed according to manufacturer's instructions. Antigen positive individuals were offered treatment with albendazole plus DEC or ivermectin. Anti-filarial antibody status was determined using the PanLF Rapid (MBDr, Selangor, Malaysia) cartridge test. EDTA anti-coagulated blood (35 µl) was placed on the sample pad and the test was performed according to manufacturer's instructions. The remaining blood was spotted onto two filter paper disks (TropBio, Townsville, Australia) (60 µl per disk), dried and stored until shipped to participating laboratories for further testing. Both the ICT and PanLF tests were conducted at the schools and blood was spotted onto filter paper disks. All field test results were entered into the PDA immediately and subsequently uploaded to the field laptop each night. Laboratory Tests Three laboratory assays were performed on the specimens, all of which were previously validated against non-endemic samples. One bloodspot (10 µl) was used for an enzyme linked immunosorbent assay (ELISA) to determine anti-filarial antibody reactivity to the recombinant antigen Bm14 (Cellabs, Sydney, Australia). Bloodspots were eluted overnight at 4°C and processed the following day according to the agreed SOP. Three dried bloodspots (3×10 µl) were used to measure quantitative filarial antigen levels by the Og4C3 ELISA (TropBio, Townsville, Australia). Bloodspots were eluted overnight at 4°C and boiled the next day. Boiled samples were centrifuged and supernatants were incubated overnight on a 96-well microtiter plate pre-coated with an Og4C3 monoclonal capture antibody. Plates were processed the next day. One bloodspot (10 µl) was used for PCR to detect the presence of parasite DNA. Bloodspots were pooled into groups of 10 individuals for initial testing. DNA was extracted using the QIAGEN DNeasy kit (Valencia, CA, USA) and analyzed by real-time PCR (qPCR) [9]. If a pool was positive, each sample that comprised the positive pool was tested individually using an additional 10 µl bloodspot. Results for all laboratory tests were entered into a standardized Microsoft Excel® spreadsheet and sent electronically to the Task Force for Global Health to be entered into the analysis database. Ethics Statement The research proposal was submitted by the principal investigators of each participating country to the local review board, or in certain cases an outside review board, as deemed most appropriate. All proposals were accepted by the respective review boards before research took place. The US-based laboratories analyzing results received an exemption from the IRBs, since all specimens and results were de-linked from personal identifiers. All subjects provided informed consent to participate in the study. More detailed information regarding the IRB institution for each country and the method for obtaining participant consent are described below. In French Polynesia, the Ethics Committee approved the French Polynesian study protocol and work. A consent form was read to all a subjects and written agreement of consent was required from subjects in order to participate in the study. Assent was obtained from children and a written consent was required from their parent or guardian. In addition to obtaining written consent from participants, interviewers documented receipt of consent for all participants using handheld PDA devices. For Ghana, the Noguchi Memorial Institute for Medical Research's Institutional Review Board approved the study protocol and work. Informed written consents were obtained from all individuals 18 years of age and above. For individuals aged 6–17 years informed assent was sought from all individuals, in addition to written consent of the parent or responsible adult. In addition to obtaining written consent from participants, interviewers documented receipt of consent for all participants using handheld PDA devices. The procedure was explained to all children 3–5 years of age, in addition to written consent of the parent or designated guardian. In Haiti the Centers for Disease Control IRB committee approved an amendment to a previously approved study protocol. Informed consent was obtained from each participant. The CDC IRB granted the team the right to obtain oral consent (assent for children of age 6 years or younger and consent of their parents) because most participants were unable to read and the research presented no more than minimal risk of harm to the subjects. Interviewers documented receipt of verbal consent for all participants using handheld PDA devices. In Sri Lanka both the Washington University IRB and the Sri Lanka Ministry of Health approved the study protocol and work. Both institutions considered the survey to be public health practice (evaluation of the national LF elimination program) and as a result did not require formal IRB submission; waiver letters were obtained. Field teams used consent scripts and obtained verbal consent (assent from children). Participation by children required consent from at least one parent plus assent from the child. The Washington University IRB and Sri Lanka Ministry of Health both approved the collection of verbal consent for the survey because the research was deemed to present no more than minimal risk of harm to the subjects. Interviewers documented receipt of verbal consent for all participants using handheld PDA devices. For Tuvalu the human research ethics committee at James Cook University approved the protocol and study. The ethical review committee at James Cook University granted the right to obtain verbal consent, as opposed to written consent, for this study, as the study was considered to present minimal risk of harm to the subjects. Assent was obtained from children, along with verbal consent from their parent or guardian. Interviewers documented receipt of verbal consent for all participants using handheld PDA devices. Finally, the Ethical Review Committee in Zanzibar (Zanzibar Health/Medical Task Force) approved the Zanzibar study protocol and work. For the community all participants were given consent forms to sign while for the school children parents/guardians of the children were informed of the study through School Committee meetings and an informed consent letter was handed over to them to be signed. In addition to obtaining written consent from participants, interviewers documented receipt of consent for all participants using handheld PDA devices. Analyses All data were compiled and managed using SQL server (2005, Microsoft Corporation®) and imported to SAS® v.9.2 (Statistical Analysis System; North Carolina) for analyses. Unless otherwise stated, all statistically significant associations were determined by setting the probability of a Type I error at 5% (α = 0.05). Univariate analyses of country, age, and gender were calculated for all specimens with results reading “positive”, “negative”, and “indeterminate” (Tables 2 and Table 3). For all remaining analyses results were limited to specimens testing “positive” or “negative.” 10.1371/journal.pntd.0001479.t003 Table 3 Demographic information by country and survey location. Location Measure French Polynesia Ghana Haiti Sri Lanka Tuvalu Zanzibar All Countries Community Age (median) 33 17 17 26 39 24 25 Age (IQR) 16–48 10–40 10–28 13–40 25–50 14–41 13–43 Percent Male 48 43 41 49 47 39 44 Total Tested 1018 1107 999 1167 1124 1028 6443 School Age (median) 7 7 7 7 9 9 7 Age (IQR) 7–10 6–10 6–10 6–10 7–10 6–10 6–10 Percent Male 50 49 49 63 48 48 51 Total Tested 365 359 323 310 357 356 2070 All Age (median) 20 12 12 19 29 16 17 Age (IQR) 9–42 8–30 7–23 8–36 10–46 10–36 9–37 Percent Male 48 44 43 52 47 41 46 Total Tested 1383 1466 1322 1477 1481 1384 8513 While five of the seven diagnostic tests provided qualitative (positive/negative) results, two provided quantitative results (Og4C3 and Bm14) in the form of unit values. In order to dichotomize these quantitative results, a cut-off value was defined for the Og4C3 and Bm14 tests, independently, such that all results with a unit value greater than the cut-off were considered “positive.” Receiver Operating Characteristic (ROC) curves were used to determine the best cut-off values, by plotting ‘sensitivity’ by ‘1-specificity’ at various signal to cut-off ratios using SAS®. ROC analysis requires identifying clearly positive and negative specimens whose assay values can be applied to the analysis, but since there is no true ‘gold standard’ for defining LF infection, operational criteria based on multiple tests were used to define these groups. This manuscript followed the Standards for the Reporting of Diagnostic accuracy studies (STARD) (Checklist S1). Results A total of 8513 people from the six countries participated in the study; 6443 through the community surveys and the remaining 2070 through the school surveys (Table 3). Specimens from these participants were used to conduct 47,110 diagnostic tests (Table 4). Of the 47,110 tests performed, 7481 test results (15.9%) were excluded from the subsequent analyses due to invalid or indeterminate test results (Table 5). Among the excluded results were all of the Bm14 tests for Sri Lanka, Tuvalu and Zanzibar (4006 tests) due to changes in the performance of the commercially manufactured kits. In addition to the Bm14, all of the PanLF and blood smear results from Zanzibar (a total of 2,329 tests) were excluded due to technical uncertainties affecting the quality of the results. Diagrams describing the process by which participant specimens were tested, excluded and classified for each of the antibody, antigen and microfilariae tests are available in the supplementary Texts S1, S2, and S3. 10.1371/journal.pntd.0001479.t004 Table 4 Specimens and tests performed by country of origin. Test Name French Polynesia Ghana Haiti Sri Lanka Tuvalu Zanzibar All Countries PanLF 1372 0 1269 1399 1448 1377 6865 Bm14 1329 1159 1214 1463 1245 1298 7708 Urine SXP 1268 0 1285 0 955 1366 4874 ICT 1359 1372 1266 1449 1455 1316 8217 Og4C3 1355 1355 1179 1432 1333 1126 7780 PCR * 1005 972 893 1161 1063 886 5980 Blood Smear 713 1081 882 1043 1015 952 5686 TOTAL 8401 5939 7988 7947 8514 8321 47110 *Based on 10 µl blood specimen. 10.1371/journal.pntd.0001479.t005 Table 5 Invalid or indeterminate test results by country (excluded from remaining analyses). Test French Polynesia Ghana Haiti Sri Lanka Tuvalu Zanzibar All Countries PanLF 66 – 48 435 382 1377 2308 Bm14 0 0 0 1463 1245 1298 4006 Urine SXP 0 – 0 – 0 0 0 ICT 25 119 33 1 7 30 215 Og4C3 0 0 0 0 0 0 0 PCR * 0 0 0 0 0 0 0 Blood Smear 0 0 0 0 0 952 952 TOTAL 91 119 81 1899 1634 4009 7481 Note: These test results make up 15.9% of the total (47,110) results. *Based on 10 µl blood specimen. ROC curves were used to determine the unit value cut-point to distinguish ‘positive’ and ‘negative’ results for the Og4C3 and Bm14 tests. For the Og4C3 antigen assessment true positives were defined as those individuals with positive specimens for either the blood smear (MF) test or PCR (parasite DNA). True negatives were defined as individuals with negative blood smears and PCR results (both negative or one negative and the other not assessed), plus a negative by ICT and a Bm14 antibody value 50 50.3 402 28.7 691 42.8 612 11.3 954 11.2 935 2.4 882 1.9 942 TOTAL 37.0 3702 17.5 5861 20.5 4874 8.6 8049 7.6 7780 1.6 5686 1.3 5980 *Based on 10 µl blood specimen. Though the overall levels of positivity were similar within targets of detection (antibody, antigen or microfilaremia), at the individual level the tests differed significantly. A comparison of the blood smear and PCR results using McNemar's test, matched on participant, found a significant difference between the two tests (p = 0.024). Likewise, a comparison of the ICT and Og4C3 results found the two antigen tests to be significantly different (p = 0.003). The prevalence of antifilarial antibodies differed significantly (p<0.0001) between Bm14, PanLF, and urine SXP tests. The results from all seven diagnostic tests indicated a significant age-prevalence trend of increasing positivity with age (p<0.0001) (Table 8). Of the diagnostic tests, the Bm14 and PanLF were found to be the most reactive in the youngest age groups. In the school studies, which focused on a comparison of 5–7 and 9–11 year olds, there were no significant differences in test results between the two age groups, and the results were subsequently pooled. The test concordance tables (Tables 9, 10, 11,12) record the pair-wise comparisons of test results within the school and community surveys. The resulting estimates can be considered the pair-wise sensitivity of the test. In the school survey, Og4C3 picked up 57% of the ICT positive results, whereas ICT picked up 51% of the Og4C3 positive results (Table 9). Among the antibody tests, Bm14 identified 90% of the positive PanLF results, whereas PanLF only identified 41% of the Bm14 results. These differences reflect the greater sensitivity of the ELISAs compared to the rapid tests. The urine SXP tests consistently identified about a quarter of the positive results from the remaining four tests. 10.1371/journal.pntd.0001479.t009 Table 9 Positive-to-positive concordance in school survey. COMPARISON TEST (Numerator) INDEX TEST (Denominator) BM14 PANLFBC URSXP ICT OG4C3 BM14 120/292 (41%) 38/283 (13%) 45/311 (14%) 53/310 (17%) PanLF 120/133 (90%) 33/136(24%) 44/145 (30%) 54/138 (39%) Urine SXP 38/42 (90%) 33/44 (75%) 16/69 (23%) 18/64 (28%) ICT 45/61 (73%) 44/63 (69%) 16/66 (24%) 42/74 (57%) Og4C3 53/63 (84%) 54/64 (84%) 18/77 (23%) 42/82 (51%) Note: Fractions represent the number of positive results for each test (numerator) out of those that were positive by the index test (denominator). The results are of the form: proportion (%). The number of positive index tests (denominator) changes by column because it only includes specimens with valid results by the comparison test (numerator). 10.1371/journal.pntd.0001479.t010 Table 10 Positive-to-positive concordance in community survey. COMPARISON TEST (Numerator) INDEX TEST (Denominator) BM14 PANLFBC URSXP ICT OG4C3 BLOOD SMEAR PCR* BM14 463/903 (51%) 386/905 (43%) 231/1015 (23%) 237/1033 (22%) 54/904 (6%) 55/1044 (5%) PanLF 463/516 (90%) 370/714 (52%) 216/869 (25%) 220/841 (26%) 47/783 (6%) 47/854 (5%) Urine SXP 386/428 (90%) 370/582 (64%) 181/878 (21%) 193/829 (23%) 36/572 (6%) 36/853 (4%) ICT 231/357 (65%) 216/384 (56%) 181/455 (40%) 299/560 (53%) 70/468 (15%) 60/571 (11%) Og4C3 237/323 (73%) 220/292 (75%) 193/367 (53%) 299/485 (62%) 76/397 (19%) 68/503 (14%) Blood Smear 54/75 (72%) 47/65 (72%) 36/64 (56%) 70/88 (80%) 76/87 (87%) 52/85 (61%) PCR * 55/62 (89%) 47/60 (78%) 36/66 (55%) 60/77 (78%) 68/75 (91%) 52/69 (75%) Note: Fractions represent the number of positive results for each test (numerator) out of those that were positive by the index test (denominator). The results are of the form: proportion (%). The number of positive index tests (denominator) changes by column because it only includes specimens with valid results by the comparison test (numerator). *Based on 10 µl blood specimen. 10.1371/journal.pntd.0001479.t011 Table 11 Negative-to-negative test concordance in school survey. COMPARISON TEST (Numerator) INDEX TEST (Denominator) BM14 PANLFBC URSXP ICT OG4C3 BM14 334/347 (96%) 338/342 (98%) 628/644 (98%) 645/655 (98%) PanLF 334/506 (66%) 566/577 (98%) 905/924 (98%) 880/890 (98%) Urine SXP 338/583 (57%) 566/669 (84%) 1012/1062 (95%) 921/980 (93%) ICT 628/894 (70%) 905/1006 (89%) 1012/1065 (95%) 1740/1780 (97%) Og4C3 645/902 (72%) 880/964 (91%) 921/967 (95%) 1740/1772 (98%) Note: Fractions represent the number of negative results for each test (numerator) out of those that were negative by the index test (denominator). The results are of the form: proportion (%). The number of negative index tests (denominator) changes by column because it only includes specimens with valid results by the comparison test (numerator). 10.1371/journal.pntd.0001479.t012 Table 12 Negative-to-negative test concordance in community survey. COMPARISON TEST (Numerator) INDEX TEST (Denominator) BM14 PANLFBC URSXP ICT OG4C3 BLOOD PCR* BM14 827/880 (94%) 825/867 (95%) 1394/1520 (91%) 1524/1610 (94%) 1404/1425 (98%) 1585/1592 (99%) PanLF 827/1267 (65%) 1401/1613 (86%) 2376/2544 (93%) 2432/2504 (97%) 2137/2155 (99%) 2512/2525 (99%) Urine SXP 825/1344 (61%) 1401/1745 (80%) 2380/2654 (89%) 2296/2470 (92%) 1595/1623 (98%) 2519/2549 (98%) ICT 1394/2178 (64%) 2376/3029 (78%) 2380/3077 (77%) 4903/5089 (96%) 3966/3984 (99%) 5149/5166 (99%) Og4C3 1524/2320 (65%) 2432/3053 (79%) 2296/2932 (78%) 4903/5164 (94%) 4051/4062 (99%) 5281/5288 (99%) Blood Smear 1404/2254 (62%) 2137/2873 (74%) 1595/2131 (74%) 3966/4364 (90%) 4051/4372 (92%) 4375/4392 (99%) PCR * 1585/2574 (61%) 2512/3319 (75%) 2519/3336 (75%) 5149/5660 (90%) 5281/5716 (92%) 4375/4408 (99%) Note: Fractions represent the number of negative results for each test (numerator) out of those that were negative by the index test (denominator). The results are of the form: proportion (%). The number of negative index tests (denominator) changes by column because it only includes specimens with valid results by the comparison test (numerator). *Based on 10 µl blood specimen. In the community survey, Og4C3 detected 87% and 91% of the blood smear and PCR positive results, respectively, while ICT detected 80% and 78% of the blood smear and PCR positive results, respectively (Table 10). The positive concordance between ICT and Og4C3 ranged from 53% (ICT positives testing positive by Og4C3) to 62% (Og4C3 positives testing positive by ICT). Of the microfilaremic individuals (positive by blood smear) only 61% were positive by a 10 µl PCR. Conversely 75% of PCR positive individuals were also positive by blood smear. Among the antibody tests, Bm14 identified 90% of individuals positive by PanLF or urine SXP. Negative test concordance in the school survey (Table 11) revealed that 98% of antibody negative individuals (by Bm14 or PanLF) also tested negative by the antigen tests (ICT or Og4C3) (i.e. few people had filarial antigenemia in the absence of a detected antibody response). Bm14 had the poorest negative concordance with the remaining tests in the school surveys; only 66–72% of those specimens negative by PanLF, urine SXP, ICT or Og4C3 were also negative by Bm14. However, since antibody tests are expected to be the most sensitive at detecting exposure to LF, it is possible that specimens negative for antigenemia would still be ‘true positive’ for Bm14 antibody. The negative concordance of the antigen tests with the antibody tests was somewhat less in the community survey compared to the school survey, with 90–97% of antibody negative specimens (by Bm14 or PanLF) also testing antigen negative (by ICT or Og4C3) (Table 12). The pair-wise specificity of Bm14 was similarly low in the community survey, as compared to the school survey, with Bm14 identifying as negative approximately two thirds of results that were negative by any of the remaining tests. Comparatively PanLF identified as negative 74–94% of results that were negative by the remaining six tests. In the absence of a true gold standard test for LF infection, operational definitions of positive and negative gold standards were used to calculate sensitivity and specificity. To measure sensitivity, ‘true positives’ were defined as being either blood smear or PCR positive. The sensitivity of the assays therefore relates to the sensitivity for detecting microfilaremic infections, a measure of justifiable interest to the global LF elimination program, since microfilariae are required to transmit infection. It is more difficult to define a gold standard for specificity of assays since it is recognized that exposure alone can convert individuals to positive-antibody status. Consequently, ‘true negatives’ for antibody tests cannot be defined based on the results of the antigen and parasite tests, making it impossible to calculate the specificity for the antibody tests. Specificity of the antigen tests can be assessed if one evaluates the ability of the antigen assays to identify individuals who are amicrofilaremic and have no antibody evidence of infection or exposure to infection. ‘True negatives’ for the antigen tests were therefore defined based on negative blood smear and PCR results (both negative or one negative and the other not assessed) as well as negative results for both Bm14 and PanLF. It is important to note that this was a conservative definition of antigen specificity, as only antibody-negative individuals were eligible to be considered ‘true negatives’ by the antigen tests (see Discussion). Sensitivity and specificity of test performance was calculated using the best-estimate gold standards as defined above. These calculations were limited to French Polynesia, Ghana, and Haiti due to missing values for Bm14 in the remaining countries. Overall, the ICT test was found to be 76% sensitive at detecting microfilaremic infections and 93% specific at identifying individuals negative for both microfilariae and antifilarial antibody (Table 13). Using the same gold standard estimates, Og4C3 was found to be 87% sensitive and 95% specific. Stratifying the results by country revealed a high degree of variability in these estimates. ICT sensitivity ranged from 61% in Ghana to 79% in Haiti and French Polynesia, while ICT specificity ranged from 89% in Haiti to 94% in Ghana. Similarly, the sensitivity of Og4C3 assays ranged from 72% in Ghana to 93% in French Polynesia, while Og4C3 specificity ranged from 92% in Ghana to 99% in French Polynesia. It is important to note that a portion of the variability is due to the relatively small sample sizes in the country-specific results, caused by the gold standard criteria. 10.1371/journal.pntd.0001479.t013 Table 13 Sensitivity, specificity, and predictive values for antigen tests. ICT Og4C3 % (N) 95% Confidence Interval % (N) 95% Confidence Interval All Countries a Sensitivity 75.5 (94) (66.8, 84.2) 87.2 (94) (80.5, 94.0) Specificity 92.5 (1647) (91.2, 93.7) 94.6 (1647) (93.5, 95.7) Pos. Predictive Value 36.4 (195) (29.7, 43.2) 48.0 (171) (40.5, 55.4) Neg. Predictive Value 98.5 (1546) (97.9, 99.1) 99.2 (1570) (98.8, 99.7) French Polynesia Sensitivity 79.3 (29) (64.6, 94.1) 93.1 (29) (83.9, 100.0) Specificity 92.3 (517) (90.0, 94.6) 98.6 (517) (97.6, 99.6) Pos. Predictive Value 36.5 (63) (24.6, 48.4) 79.4 (34) (65.8, 93) Neg. Predictive Value 98.8 (483) (97.8, 99.8) 99.6 (512) (99.1, 100.0) Ghana Sensitivity 61.1 (18) (38.6, 83.6) 72.2 (18) (51.5, 92.9) Specificity 94.3 (754) (92.6, 96.0) 91.6 (754) (89.7, 93.6) Pos. Predictive Value 20.4 (54) (9.6, 31.1) 17.1 (76) (8.6, 25.6) Neg. Predictive Value 99.0 (718) (98.3, 99.7) 99.3 (696) (98.7, 99.9) Haiti Sensitivity 78.7 (47) (67.0, 90.4) 89.4 (47) (80.5, 98.2) Specificity 89.1 (376) (86.0, 92.3) 94.9 (376) (92.7, 97.2) Pos. Predictive Value 47.4 (78) (36.4, 58.5) 68.9 (61) (57.2, 80.5) Neg. Predictive Value 97.1 (345) (95.3, 98.9) 98.6 (362) (97.4, 99.8) Definition of antigen test accuracy. ‘True Positive’: Blood Smear or PCR (+). ‘True Negative’: Blood Smear and PCR not (+); Bm14 and PanLF not (+). a Includes French Polynesia, Ghana and Haiti only; others excluded due to missing values for Bm14. The sensitivity of the antibody tests at detecting microfilaremic individuals was 81% for Bm14, 73% for PanLF and 55% for SXP in urine (Table 14). Again, there was significant variability in these estimates at the country level, with Bm14 sensitivity estimates ranging from 50% in Ghana to 92% in French Polynesia. PanLF sensitivity ranged from 50% in Tuvalu to 77% in French Polynesia. Urine SXP sensitivity ranged from 32% in Haiti to 92% in French Polynesia. As with the antigen results, small sample size due to the limited number of microfilaremic individuals, is likely to account for some of the variability in the sensitivity estimates. 10.1371/journal.pntd.0001479.t014 Table 14 Sensitivity, specificity, and predictive values for antibody tests. PanLF Bm14 Urine SXP Rate 95% Confidence Interval Rate 95% Confidence Interval Rate 95% Confidence Interval All Countries Sensitivity 73.2 (82) (63.5, 82.8) 81.1 (74) (72.2, 90.0) 54.5 (77) (43.4, 65.7) Neg. Predictive Value 99.1 (2390) (98.7, 99.5) 98.2 (790) (97.3, 99.1) 97.7 (1522) (96.9, 98.5) French Polynesia Sensitivity 76.9 (26) (60.7, 93.1) 92.3 (26) (82.1, 100) 92.3 (26) (82.1, 102.6) Neg. Predictive Value 99.1 (675) (98.4, 99.8) 99.5 (438) (98.9, 100) 99.6 (539) (99.1, 100) Ghana Sensitivity – – 50.0 (16) (25.5, 74.5) – – Neg. Predictive Value – – 98.8 (680) (98.0, 99.6) – – Haiti Sensitivity 70.8 (48) (58.0, 83.7) 75.0 (48) (62.8, 87.2) 31.9 (47) (18.6, 45.2) Neg. Predictive Value 96.8 (447) (95.3, 98.5) 96.6 (336) (94.7, 98.5) 94.2 (554) (92.3, 96.2) Sri Lanka Sensitivity 66.7 (3) (13.3, 100) – – – – Neg. Predictive Value 99.9 (684) (99.6, 100) – – – – Tuvalu Sensitivity 50.0 (2) (0, 100) – – 50.0 (2) (0, 100) Neg. Predictive Value 99.8 (548) (99.5, 100) – – 99.7 (396) (99.3, 100) Zanzibar Sensitivity – – – – 42.9 (7) (6.2, 79.5) Neg. Predictive Value – – – – 99.3 (565) (98.6, 100) Definition of antibody test accuracy. ’True Positive’: Blood Smear or PCR (+). ‘True Negative’: Blood Smear and PCR not (+); ICT and Og4C3 not (+). Discussion Deciding whether or not to stop MDA will be expensive and laborious for countries because of both the sampling and testing requirements, so the selection of the diagnostic tool to use is of paramount importance. Accuracy, programmatic feasibility, testing requirements, time and cost must all be factored into the evaluation of the potential diagnostic tools [10]. The current study arose in response to this challenge. A summary of the features and performance of the seven diagnostic tests evaluated is presented in the supporting table at the end of this paper (Table S1). A common theme that emerges from this multi-country study is that the majority of the tests did not perform as well as expected, with regards to both accuracy and reliability. Though this finding is disappointing, it is important to note that the study represents an effectiveness trial, with the majority of the tests being conducted under varying conditions on-site or in field laboratories by local technicians. Though all the technicians were well-schooled, there were differences in adherence to established protocols. Indeed, the lessons learned with respect to test performance in this multi-country setting provide valuable insight and will hopefully lead to future test improvements. Some common areas identified for improvement across many of the tests include the need for thorough training of test-readers and lab technicians, along with simplification of logistical issues related to specimen storage, shipping and linking with test results. Another important concern identified was the need for improved standardization and rigorous quality control of commercially manufactured tests and kits, a problem noted particularly with variability in the lots of commercial kits measuring Bm14 antibodies (CELISA) and the TropBio Og4C3 antigen test. In addition, with an increasing reliance on laboratory tests for programmatic decision making, there is a critical need to provide laboratories with standard operating procedures and assay controls (e.g., samples for standard curves, positive and negative controls) that can be used across all labs. Both efforts are needed to guarantee that results generated across countries are comparable and can be used to make robust program decisions. Use of eluted filter paper blood spots rather than fresh serum in this study might have contributed to the sub-optimal performance of the Bm14 and Og4C3 ELISA tests. When this study was planned, all investigators on the project agreed that filter paper blood spots should be used for the ELISA tests. Multiple studies have described the equivalence of the blood spot and serum specimens for use in both the Bm14 and Og4C3 assays [11]–[14], but since this analysis was conducted, other studies have suggested that blood spots on filter paper might not perform as well as serum in the Bm14 ELISA, and there has been a call for additional studies to compare the two methods directly [15]. In the present study, project laboratories found that blood spot eluates sometimes produced variable and often high background OD values in the Bm14 ELISA, so that data from these countries had to be rejected (Table 5). When evaluating the best diagnostic tool for programmatic decision-making, the advantages of point-of-care tests are appreciable. In this study, the anticipated advantages of lab-based tests (i.e. better sensitivity and specificity) were outweighed by the convenience, comparable accuracy, and ability to standardize more easily the point-of-care tests. Given the challenges experienced with the lab-based tests (see Table S1) a point-of-care test appears to be most preferable for assessments leading to a decision on whether or not to stop MDA. Taking these aspects into consideration, we conclude that the ICT should be the primary tool recommended now for decision-making about stopping MDAs in areas with W. bancrofti infections. As a point-of-care card test, the ICT is relatively inexpensive, requires no laboratory equipment, and can be processed in 10 minutes, very consistent with programmatic use. As an antigen test, a “positive” ICT result is indicative of the presence of adult worms and the potential for ongoing transmission—arguably a more appropriate measure for establishing an end-point for MDA than antifilarial antibodies detecting exposure to infection. Additional research is needed to determine whether antibody tests are more appropriate for post-MDA surveillance. One concern with the ICT that arose from this study was the potential subjectivity involved in determining whether a weak-looking band indicates a positive or negative test. Fortunately, improvements to training and training materials can be expected to resolve some of this anxiety about the test's use. Indeed, with these improvements, the ICT appears as the diagnostic tool best suited for use even in low-resource settings to determine when the end-point for the MDA phase of the LF elimination program has been reached. This recommendation for the ICT test is not meant to undervalue the relatively good performance of the Og4C3 test, which was even more accurate than the ICT in identifying microfilaremic individuals in this study. However, as a laboratory-based assay, the Og4C3 test provided some additional challenges, including inconsistent product performance over time and quality control in the testing laboratories. The Og4C3 and other ELISA tests have performed well in research labs; our results and experience with quality control have illustrated the potential problems with translating these tools into an operational setting. The Og4C3 provides a satisfactory diagnostic alternative that may be appropriate in settings with well-equipped laboratories and the ability to adhere to a quality assurance strategy. Limitations and Areas of Future Research The absence of a true gold standard test for LF infection was a major limitation of this analysis. The need to define a best-estimate gold standard from the available tests further limited the analysis since tests used in the definition cannot be assessed by the same definition without entering into a tautology (an issue for both PCR and blood smear). To measure the sensitivity and specificity of the tests it was necessary to use the best-estimate gold standard to define “true positive” and “true negative” results and then limit the analysis to specimens falling within either category. Based on the criteria used, individuals who tested not positive by blood smear and PCR but positive by Bm14 or PanLF (n = 1737) were excluded from sensitivity and specificity calculations for antigen tests, as they were neither “true positive” nor “true negative”. It is important to note that such results are biologically plausible, as they may be indicative of individuals with increasing, but undetectable antigen levels, or they can represent individuals who are no longer infected but still have residual antifilarial antibodies. It is clear, though, that the definitions used to establish test sensitivity and specificity are imperfect because of the impossibility of defining a true gold standard of infection. The ROC analysis for determining Bm14 and Og4C3 cut-off levels was also contingent upon the best-estimate criteria. Therefore, any systematic errors resulting in misclassification of the tests used in the best estimate gold standard have the potential to influence this analysis. A sensitivity analysis was run, which evaluated the suspected ICT false positives, as well as false positive and false negative results with PCR and blood smear. The results from the sensitivity analysis indicate that the sensitivity and specificity of the tests, and conclusions drawn from this analysis, to be robust under various scenarios of misclassification (data not shown). For example, if all ICT-positive specimens with an Og4C3 quantitative result of “0” (N = 48) were considered “false positives” and recoded as ICT-negative, the sensitivity and specificity estimates would not change significantly. Finally, additional sources of error, common across many tests and countries, stemmed from external issues. Logistical constraints and risk of specimen contamination varied by country and is likely to have caused some of the variance in test performance. The possibility of reader error cannot be discounted. Some of this study's findings were unexpected and warrant future research and analysis. Though the overall prevalence of detection of antigen or antibody was similar for a given target, the distributions of the test results suggest that they are performing differently. Whether or not this difference is due to variability of test performance or to the tests' detecting different sub-populations of positive individuals is hard to determine. For example, the correlation between the ICT and Og4C3 antigen tests was much lower than expected (phi coefficient 0.53); however both tests identified similar overall prevalence of antigenemia. Part of the discordance may be explained by the cut-point selected for the Og4C3 test. Cut-points for Og4C3 were defined such that the only “true positive” specimens were those testing positive for microfilariae (blood smear or PCR). This is likely to have limited our ROC analysis to “strong positive” Og4C3 results (those with higher unit values), as previous studies have found Og4C3 unit values to be positively correlated with MF values [16]–[18]. Whether or not this biased our final cut-point is unclear. However, the poor correlation may also suggest that the ICT and Og4C3 test are capturing different aspects of antigenemia. A more controlled laboratory study would be needed to determine if this were the case. Next Steps The selection of the ICT as the best tool for establishing the MDA stopping criteria is a significant programmatic advance. However, further assessment is needed to develop the appropriate guidelines for country program managers eager to decide if they are ready to stop MDA. The selection of a diagnostic test is the first step, but it is necessary to define a “threshold” of positive results below which a country can safely discontinue its MDA program. With the less-than-perfect sensitivity and specificity of the diagnostic tools, such a threshold should be based on statistical criteria that can account for the level of error in the measurement with a 95% confidence interval [4]. Also integral to this assessment is the method by which the population will be sampled, as both sampling strategy and threshold will influence the sample size and power of the surveys used to determine if the stopping MDA criteria are met. Addressing these issues is the focus of ongoing research efforts. The global community has already made great progress on the path to elimination of lymphatic filariasis. The selection of the ICT test for defining the end-point of MDA, based on both the present study and earlier observations permits the WHO to develop appropriate guidelines that will allow many countries to move closer to stopping their MDA programs. Future studies to evaluate sampling strategies, ICT-based stopping thresholds, and long-term consequences of the stopping decision will increasingly strengthen the evidence base for the programmatic guidelines targeting LF elimination. Supporting Information Checklist S1 STARD Checklist. (DOC) Click here for additional data file. Table S1 A summary of the features and performance of the seven diagnostic tests evaluated. (DOC) Click here for additional data file. Flow Chart S1 STARD flow chart detailing the method for assessment of antibody diagnostic tests. (DOCX) Click here for additional data file. Flow Chart S2 STARD flow chart detailing the method for assessment of antigen diagnostic tests. (DOCX) Click here for additional data file. Flow Chart S3 STARD flow chart detailing the method for assessment of microfilariae diagnostic tests. (DOCX) Click here for additional data file.
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                Contributors
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, USA )
                1935-2727
                1935-2735
                November 2014
                13 November 2014
                : 8
                : 11
                : e3281
                Affiliations
                [1 ]Department of Internal Medicine, Infectious Diseases Division, Washington University School of Medicine, St. Louis, Missouri, United States of America
                [2 ]Anti Filariasis Campaign, Sri Lanka Ministry of Health, Colombo, Sri Lanka
                [3 ]Division of Biostatistics, Washington University School of Medicine, St. Louis, Missouri, United States of America
                Institute of Medical Microbiology, Immunology and Parasitology, Germany
                Author notes

                The filarial antigen test used in this study uses reagents licensed from Barnes-Jewish Hospital, an affiliation of GJW. All royalties from sales of these tests go to the Barnes Jewish Hospital Foundation, a not for profit charitable organization ( http://www.barnesjewish.org/giving/about-us). This does not alter our adherence to all PLOS policies on sharing data and materials.

                Conceived and designed the experiments: WDYP SNP SS RUR GJW. Performed the experiments: WDYP SNP KCN SDS ADW. Analyzed the data: KCN SDS SNP JPM ADW RUR GJW. Wrote the paper: RUR GJW.

                Article
                PNTD-D-14-00651
                10.1371/journal.pntd.0003281
                4230885
                25393404
                18d620bd-777f-4a66-9e00-0a90d0f43744
                Copyright @ 2014

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 17 April 2014
                : 19 September 2014
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                Pages: 13
                Funding
                This work was supported in part by grants from the U.S. National Institutes of Health (AI065715), www.nih.gov; the Center for Neglected Tropical Diseases, Liverpool School of Tropical Medicine, Liverpool, UK, www.cntd.org; the Barnes-Jewish Hospital Foundation (6794-33), BJHFoundation.org; and the Bill & Melinda Gates Foundation (GH5342), gatesfoundation.org. GJW was the PI for these grants. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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                The authors confirm that, for approved reasons, some access restrictions apply to the data underlying the findings. All relevant data are within the paper and its Supporting Information files except for the following: Deidentified individual records from the community surveys. This information is available from Becker Library at Washington University School of Medicine (URL http://digitalcommons.wustl.edu/open_access_pubs/3378/).

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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