Newton-Cartan geometry has played a central role in recent discussions of non-relativistic holography and condensed matter systems. Although the conformal transformation in non-relativistic holography can be easily rephrased in Newton-Cartan geometry, we show that it requires a nontrivial procedure to get the consistent form of anisotropic disformal transformation in this geometry. Furthermore, as an application of the newly obtained disformal transformation, we use it to induce a new geometry.