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      Molecular Epidemiology of Ascariasis: A Global Perspective on the Transmission Dynamics of Ascaris in People and Pigs

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          Abstract

          Background.  The roundworm Ascaris lumbricoides infects 0.8 billion people worldwide, and Ascaris suum infects innumerable pigs across the globe. The extent of natural cross-transmission of Ascaris between pig and human hosts in different geographical settings is unknown, warranting investigation.

          Methods.  Adult Ascaris organisms were obtained from humans and pigs in Europe, Africa, Asia, and Latin America. Barcodes were assigned to 536 parasites on the basis of sequence analysis of the mitochondrial cytochrome c oxidase I gene. Genotyping of 410 worms was also conducted using a panel of microsatellite markers. Phylogenetic, population genetic, and Bayesian assignment methods were used for analysis.

          Results.  There was marked genetic segregation between worms originating from human hosts and those originating from pig hosts. However, human Ascaris infections in Europe were of pig origin, and there was evidence of cross-transmission between humans and pigs in Africa. Significant genetic differentiation exists between parasite populations from different countries, villages, and hosts.

          Conclusions.  In conducting an analysis of variation within Ascaris populations from pig and human hosts across the globe, we demonstrate that cross-transmission takes place in developing and developed countries, contingent upon epidemiological potential and local phylogeography. Our results provide novel insights into the transmission dynamics and speciation of Ascaris worms from humans and pigs that are of importance for control programs.

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          Bayesian identification of admixture events using multilocus molecular markers.

          Bayesian statistical methods for the estimation of hidden genetic structure of populations have gained considerable popularity in the recent years. Utilizing molecular marker data, Bayesian mixture models attempt to identify a hidden population structure by clustering individuals into genetically divergent groups, whereas admixture models target at separating the ancestral sources of the alleles observed in different individuals. We discuss the difficulties involved in the simultaneous estimation of the number of ancestral populations and the levels of admixture in studied individuals' genomes. To resolve this issue, we introduce a computationally efficient method for the identification of admixture events in the population history. Our approach is illustrated by analyses of several challenging real and simulated data sets. The software (baps), implementing the methods introduced here, is freely available at http://www.rni.helsinki.fi/~jic/bapspage.html.
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            Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer.

            DNA sequence divergence at internal transcribed spacer regions (ITS-1 and ITS-2) was compared with divergence at mitochondrial cox1 or nad4 loci in pairs of congeneric nematode species. Mitochondrial sequences accumulate substitutions much more quickly than internal transcribed spacer, the difference being most striking in the most closely related species pairs. Thus, mitochondrial DNA may be the best choice for applications in which one is using sequence data on small numbers of individuals to search for potential cryptic species. On the other hand, internal transcribed spacer remains an excellent tool for DNA diagnostics (quickly distinguishing between known species) owing to its lower level of intraspecific polymorphism.
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              FSTAT (version 1.2): A computer program to calculate F‐statistics

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                Author and article information

                Journal
                J Infect Dis
                J. Infect. Dis
                jid
                jinfdis
                The Journal of Infectious Diseases
                Oxford University Press
                0022-1899
                1537-6613
                15 September 2014
                31 March 2014
                31 March 2014
                : 210
                : 6
                : 932-941
                Affiliations
                [1 ]Department of Production and Population Health, Royal Veterinary College, Hatfield, Hertfordshire, United Kingdom
                [2 ]Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen , Denmark
                [3 ]Department of Clinical Microbiology, Royal Cornwall Hospital, Truro
                [4 ]Department of Parasitology, Pembroke Place, Liverpool School of Tropical Medicine, United Kingdom
                Author notes

                Presented in part: British Society of Parasitology Spring Meeting, Glasgow, United Kingdom, April 2012.

                Correspondence: J. Russell Stothard, PhD, Department of Parasitology, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK ( jrstoth@ 123456liv.ac.uk ).
                Article
                jiu193
                10.1093/infdis/jiu193
                4136802
                24688073
                1ac49e10-fab7-4f4d-9f1d-c5cb83c5e4fc
                © The Author 2014. Published by Oxford University Press on behalf of the Infectious Diseases Society of America.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 15 January 2014
                : 19 March 2014
                Categories
                Major Articles and Brief Reports
                Parasites

                Infectious disease & Microbiology
                ascaris,giant roundworm,population genetics,soil-transmitted helminth,zoonosis,neglected tropical disease,microsatellite,barcode

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