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      N 6 -methyladenosine regulates glycolysis of cancer cells through PDK4

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          Abstract

          Studies on biological functions of N 6-methyladenosine (m 6A) modification in mRNA have sprung up in recent years. We find m 6A can positively regulate the glycolysis of cancer cells. Specifically, m 6A-sequencing and functional studies confirm that pyruvate dehydrogenase kinase 4 (PDK4) is involved in m 6A regulated glycolysis and ATP generation. The m 6A modified 5′UTR of PDK4 positively regulates its translation elongation and mRNA stability via binding with YTHDF1/eEF-2 complex and IGF2BP3, respectively. Targeted specific demethylation of PDK4 m 6A by dm 6ACRISPR system can significantly decrease the expression of PDK4 and glycolysis of cancer cells. Further, TATA-binding protein (TBP) can transcriptionally increase the expression of Mettl3 in cervical cancer cells via binding to its promoter. In vivo and clinical data confirm the positive roles of m 6A/PDK4 in tumor growth and progression of cervical and liver cancer. Our study reveals that m 6A regulates glycolysis of cancer cells through PDK4.

          Abstract

          Dysregulation of N6-Methyladenosine (m 6A) is associated with cancer progression. Here, authors show that m 6A methylation of pyruvate dehydrogenase kinase 4 (PDK4) positively regulates its mRNA stability and translation, and consequently affects glycolysis in cancer cells

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          On the origin of cancer cells.

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            PROMO: detection of known transcription regulatory elements using species-tailored searches.

            We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences.
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              VIRMA mediates preferential m 6 A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation

              N 6-methyladenosine (m6A) is enriched in 3′untranslated region (3′UTR) and near stop codon of mature polyadenylated mRNAs in mammalian systems and has regulatory roles in eukaryotic mRNA transcriptome switch. Significantly, the mechanism for this modification preference remains unknown, however. Herein we report a characterization of the full m6A methyltransferase complex in HeLa cells identifying METTL3/METTL14/WTAP/VIRMA/HAKAI/ZC3H13 as the key components, and we show that VIRMA mediates preferential mRNA methylation in 3′UTR and near stop codon. Biochemical studies reveal that VIRMA recruits the catalytic core components METTL3/METTL14/WTAP to guide region-selective methylations. Around 60% of VIRMA mRNA immunoprecipitation targets manifest strong m6A enrichment in 3′UTR. Depletions of VIRMA and METTL3 induce 3′UTR lengthening of several hundred mRNAs with over 50% targets in common. VIRMA associates with polyadenylation cleavage factors CPSF5 and CPSF6 in an RNA-dependent manner. Depletion of CPSF5 leads to significant shortening of 3′UTR of over 2800 mRNAs, 84% of which are modified with m6A and have increased m6A peak density in 3′UTR and near stop codon after CPSF5 knockdown. Together, our studies provide insights into m6A deposition specificity in 3′UTR and its correlation with alternative polyadenylation.
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                Author and article information

                Contributors
                whongsh@mail.sysu.edu.cn
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                22 May 2020
                22 May 2020
                2020
                : 11
                : 2578
                Affiliations
                [1 ]ISNI 0000 0001 2360 039X, GRID grid.12981.33, Guangdong Key Laboratory of Chiral Molecule and Drug Discovery, School of Pharmaceutical Sciences, , Sun Yat-sen University, ; Guangzhou, Guangdong 510006 China
                [2 ]ISNI 0000 0001 0266 8918, GRID grid.412017.1, Institute of Pharmacy & Pharmacology, , University of South China, ; Hengyang, Hunan 421001 China
                [3 ]ISNI 0000 0004 1757 4123, GRID grid.449838.a, Department of Basic Medicine, , Xiangnan University, ; Chenzhou, Hunan 423000 China
                [4 ]Sun Yat-sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center for Cancer Medicine, Guangzhou, 510060 China
                [5 ]ISNI 0000 0001 2360 039X, GRID grid.12981.33, Center for Translational Medicine, The First Affiliated Hospital, , Sun Yat-sen University, ; Guangzhou, China
                Author information
                http://orcid.org/0000-0002-7065-614X
                http://orcid.org/0000-0002-0054-4820
                Article
                16306
                10.1038/s41467-020-16306-5
                7244544
                32444598
                1b3218f9-b81b-40e2-ad1e-229570b651c9
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 22 February 2019
                : 17 April 2020
                Funding
                Funded by: This research was supported by the National Natural Science Foundation of China (Grant Nos. 81973343, 81673454, 81672608, and 31801197), the Guangdong Provincial Key Laboratory of Chiral Molecule and Drug Discovery (2019B030301005), the Guangdong Provincial Key Laboratory of Construction Foundation (No. 2017B030314030), the Fundamental Research Funds for the Central Universities (Sun Yat-sen University) (Nos.19ykpy130 and 19ykzd24), the Natural Science Foundation of Guangdong Province of China (No. 2020A1515010291), and the China Postdoctoral Science Foundation (No. 2018M643354).
                Categories
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                © The Author(s) 2020

                Uncategorized
                cancer metabolism,oncology
                Uncategorized
                cancer metabolism, oncology

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