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      Role of Shwachman-Bodian-Diamond syndrome protein in translation machinery and cell chemotaxis: a comparative genomics approach

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          Abstract

          Shwachman-Bodian-Diamond syndrome (SBDS) is linked to a mutation in a single gene. The SBDS proinvolved in RNA metabolism and ribosome-associated functions, but SBDS mutation is primarily linked to a defect in polymorphonuclear leukocytes unable to orient correctly in a spatial gradient of chemoattractants. Results of data mining and comparative genomic approaches undertaken in this study suggest that SBDS protein is also linked to tRNA metabolism and translation initiation. Analysis of crosstalk between translation machinery and cytoskeletal dynamics provides new insights into the cellular chemotactic defects caused by SBDS protein malfunction. The proposed functional interactions provide a new approach to exploit potential targets in the treatment and monitoring of this disease.

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          Author and article information

          Journal
          Adv Appl Bioinform Chem
          Advances and Applications in Bioinformatics and Chemistry : AABC
          Dove Medical Press
          1178-6949
          2011
          21 September 2011
          : 4
          : 43-50
          Affiliations
          Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom; Fellowship for the Interpretation of Genomes, Burr Ridge, IL, USA
          Author notes
          Correspondence: Olga Vasieva, Institute of Integrative Biology, University of Liverpool, Crown St, Liverpool, L69 7ZB, United Kingdom, Tel +44 15 1795 5140, Fax +44 15 1795 4406, Email o.vasieva@ 123456liv.ac.uk
          Article
          aabc-4-043
          10.2147/AABC.S23510
          3202468
          22046100
          1d0cfa1b-23dd-49da-9e67-9c29d54b96e2
          © 2011 Vasieva, publisher and licensee Dove Medical Press Ltd.

          This is an Open Access article which permits unrestricted noncommercial use, provided the original work is properly cited.

          History
          : 20 September 2011
          Categories
          Original Research

          Bioinformatics & Computational biology
          translation,gene proximity,wybutosine,genomics,chemotaxis,trna,shwachman-bodian-diamond syndrome

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