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      CD4-Transgenic Zebrafish Reveal Tissue-Resident Th2- and Regulatory T Cell–like Populations and Diverse Mononuclear Phagocytes

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          Abstract

          CD4 + T cells are at the nexus of the innate and adaptive arms of the immune system. However, little is known about the evolutionary history of CD4 + T cells, and it is unclear whether their differentiation into specialized subsets is conserved in early vertebrates. In this study, we have created transgenic zebrafish with vibrantly labeled CD4 + cells allowing us to scrutinize the development and specialization of teleost CD4 + leukocytes in vivo. We provide further evidence that CD4 + macrophages have an ancient origin and had already emerged in bony fish. We demonstrate the utility of this zebrafish resource for interrogating the complex behavior of immune cells at cellular resolution by the imaging of intimate contacts between teleost CD4 + T cells and mononuclear phagocytes. Most importantly, we reveal the conserved subspecialization of teleost CD4 + T cells in vivo. We demonstrate that the ancient and specialized tissues of the gills contain a resident population of il-4/13b–expressing Th2-like cells, which do not coexpress il-4/13a. Additionally, we identify a contrasting population of regulatory T cell–like cells resident in the zebrafish gut mucosa, in marked similarity to that found in the intestine of mammals. Finally, we show that, as in mammals, zebrafish CD4 + T cells will infiltrate melanoma tumors and obtain a phenotype consistent with a type 2 immune microenvironment. We anticipate that this unique resource will prove invaluable for future investigation of T cell function in biomedical research, the development of vaccination and health management in aquaculture, and for further research into the evolution of adaptive immunity.

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          Most cited references59

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          Accounting for technical noise in single-cell RNA-seq experiments.

          Single-cell RNA-seq can yield valuable insights about the variability within a population of seemingly homogeneous cells. We developed a quantitative statistical method to distinguish true biological variability from the high levels of technical noise in single-cell experiments. Our approach quantifies the statistical significance of observed cell-to-cell variability in expression strength on a gene-by-gene basis. We validate our approach using two independent data sets from Arabidopsis thaliana and Mus musculus.
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            Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

            We introduce Sailfish, a computational method for quantifying the abundance of previously annotated RNA isoforms from RNA-seq data. Because Sailfish entirely avoids mapping reads, a time-consuming step in all current methods, it provides quantification estimates much faster than do existing approaches (typically 20 times faster) without loss of accuracy. By facilitating frequent reanalysis of data and reducing the need to optimize parameters, Sailfish exemplifies the potential of lightweight algorithms for efficiently processing sequencing reads.
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              Transplantation and in vivo imaging of multilineage engraftment in zebrafish bloodless mutants.

              The zebrafish is firmly established as a genetic model for the study of vertebrate blood development. Here we have characterized the blood-forming system of adult zebrafish. Each major blood lineage can be isolated by flow cytometry, and with these lineal profiles, defects in zebrafish blood mutants can be quantified. We developed hematopoietic cell transplantation to study cell autonomy of mutant gene function and to establish a hematopoietic stem cell assay. Hematopoietic cell transplantation can rescue multilineage hematopoiesis in embryonic lethal gata1-/- mutants for over 6 months. Direct visualization of fluorescent donor cells in embryonic recipients allows engraftment and homing events to be imaged in real time. These results provide a cellular context in which to study the genetics of hematopoiesis.
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                Author and article information

                Journal
                J Immunol
                J. Immunol
                jimmunol
                jimmunol
                JI
                The Journal of Immunology Author Choice
                AAI
                0022-1767
                1550-6606
                1 November 2016
                30 September 2016
                : 197
                : 9
                : 3520-3530
                Affiliations
                [* ]Faculty of Life Sciences, The University of Manchester, Manchester M13 9PT, United Kingdom;
                []Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, United Kingdom;
                []Department of Haematology, University of Cambridge, Cambridge CB2 0PT, United Kingdom;
                [§ ]Wellcome Trust–Medical Research Council Cambridge Stem Cell Institute, Cambridge CB2 1QR, United Kingdom;
                []Department of Infection, Immunity and Cardiovascular Disease, Medical School, University of Sheffield, Sheffield S10 2RX, United Kingdom;
                []Bateson Centre, University of Sheffield, Sheffield S10 2TN, United Kingdom; and
                [# ]Scottish Fish Immunology Research Centre, School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom
                Author notes
                [1]

                C.T.D. and R.T.N. contributed equally to this work.

                Address correspondence and reprint requests to Dr. Adam F. L. Hurlstone or Dr. Ana Cvejic, Faculty of Life Sciences, The University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, U.K. (A.F.L.H.) or Sanger Institute, Hinxton, Cambridge CB10 1HH, U.K. (A.C.). E-mail addresses: adam.hurlstone@ 123456manchester.ac.uk (A.F.L.H.) or as889@ 123456cam.ac.uk (A.C.)
                Author information
                http://orcid.org/0000-0002-0460-4309
                http://orcid.org/0000-0002-6891-5181
                http://orcid.org/0000-0002-2771-5562
                http://orcid.org/0000-0001-8781-176X
                http://orcid.org/0000-0003-3204-9311
                http://orcid.org/0000-0001-5260-9457
                Article
                ji_1600959
                10.4049/jimmunol.1600959
                5073357
                27694495
                20129462-358e-43d8-9f74-ef984e5155b9
                Copyright © 2016 The Authors

                This is an open-access article distributed under the terms of the CC-BY 3.0 Unported license .

                History
                : 08 June 2016
                : 07 September 2016
                Page count
                Figures: 5, Equations: 0, References: 69, Pages: 11
                Categories
                Immune Regulation

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