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      Membrane Active Antimicrobial Peptides: Translating Mechanistic Insights to Design

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          Abstract

          Antimicrobial peptides (AMPs) are promising next generation antibiotics that hold great potential for combating bacterial resistance. AMPs can be both bacteriostatic and bactericidal, induce rapid killing and display a lower propensity to develop resistance than do conventional antibiotics. Despite significant progress in the past 30 years, no peptide antibiotic has reached the clinic yet. Poor understanding of the action mechanisms and lack of rational design principles have been the two major obstacles that have slowed progress. Technological developments are now enabling multidisciplinary approaches including molecular dynamics simulations combined with biophysics and microbiology toward providing valuable insights into the interactions of AMPs with membranes at atomic level. This has led to increasingly robust models of the mechanisms of action of AMPs and has begun to contribute meaningfully toward the discovery of new AMPs. This review discusses the detailed action mechanisms that have been put forward, with detailed atomistic insights into how the AMPs interact with bacterial membranes. The review further discusses how this knowledge is exploited toward developing design principles for novel AMPs. Finally, the current status, associated challenges, and future directions for the development of AMP therapeutics are discussed.

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          Most cited references200

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          Defensins: antimicrobial peptides of innate immunity.

          Tomas Ganz (2003)
          The production of natural antibiotic peptides has emerged as an important mechanism of innate immunity in plants and animals. Defensins are diverse members of a large family of antimicrobial peptides, contributing to the antimicrobial action of granulocytes, mucosal host defence in the small intestine and epithelial host defence in the skin and elsewhere. This review, inspired by a spate of recent studies of defensins in human diseases and animal models, focuses on the biological function of defensins.
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            Antimicrobial peptides of multicellular organisms.

            Multicellular organisms live, by and large, harmoniously with microbes. The cornea of the eye of an animal is almost always free of signs of infection. The insect flourishes without lymphocytes or antibodies. A plant seed germinates successfully in the midst of soil microbes. How is this accomplished? Both animals and plants possess potent, broad-spectrum antimicrobial peptides, which they use to fend off a wide range of microbes, including bacteria, fungi, viruses and protozoa. What sorts of molecules are they? How are they employed by animals in their defence? As our need for new antibiotics becomes more pressing, could we design anti-infective drugs based on the design principles these molecules teach us?
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              Peptidoglycan structure and architecture.

              The peptidoglycan (murein) sacculus is a unique and essential structural element in the cell wall of most bacteria. Made of glycan strands cross-linked by short peptides, the sacculus forms a closed, bag-shaped structure surrounding the cytoplasmic membrane. There is a high diversity in the composition and sequence of the peptides in the peptidoglycan from different species. Furthermore, in several species examined, the fine structure of the peptidoglycan significantly varies with the growth conditions. Limited number of biophysical data on the thickness, elasticity and porosity of peptidoglycan are available. The different models for the architecture of peptidoglycan are discussed with respect to structural and physical parameters.
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                Author and article information

                Contributors
                Journal
                Front Neurosci
                Front Neurosci
                Front. Neurosci.
                Frontiers in Neuroscience
                Frontiers Media S.A.
                1662-4548
                1662-453X
                14 February 2017
                2017
                : 11
                : 73
                Affiliations
                [1] 1Ocular Chemistry and Anti-Infectives, Singapore Eye Research Institute Singapore, Singapore
                [2] 2Agency for Science, Technology and Research (A*STAR), Bioinformatics Institute Singapore, Singapore
                [3] 3Duke-NUS Graduate Medical School, SRP Neuroscience and BD Singapore, Singapore
                [4] 4Department of Biological Sciences, National University of Singapore Singapore, Singapore
                [5] 5School of Biological Sciences, Nanyang Technological University Singapore, Singapore
                Author notes

                Edited by: Hubert Vaudry, University of Rouen, France

                Reviewed by: Nils Lambrecht, Veterans Administration Long Beach and University of California Irvine, USA; John Michael Conlon, Ulster University, UK

                *Correspondence: Roger W. Beuerman rwbeuerman@ 123456gmail.com

                This article was submitted to Neuroendocrine Science, a section of the journal Frontiers in Neuroscience

                Article
                10.3389/fnins.2017.00073
                5306396
                28261050
                22aaec7b-436f-469e-b53a-ca800748d478
                Copyright © 2017 Li, Koh, Liu, Lakshminarayanan, Verma and Beuerman.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 29 November 2016
                : 31 January 2017
                Page count
                Figures: 4, Tables: 1, Equations: 0, References: 203, Pages: 18, Words: 15714
                Funding
                Funded by: National Medical Research Council 10.13039/501100001349
                Award ID: NMRC/TCR/002-SERI/2008/R618
                Award ID: NMRC/BNIG/2016/2014
                Categories
                Neuroscience
                Review

                Neurosciences
                antimicrobial peptides,action mechanism,membrane,antibiotic resistance,peptide antibiotics

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