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      Biomarker profiling in reef corals of Tonga’s Ha’apai and Vava’u archipelagos

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          Abstract

          Given the significant threats towards Earth’s coral reefs, there is an urgent need to document the current physiological condition of the resident organisms, particularly the reef-building scleractinians themselves. Unfortunately, most of the planet’s reefs are understudied, and some have yet to be seen. For instance, the Kingdom of Tonga possesses an extensive reef system, with thousands of hectares of unobserved reefs; little is known about their ecology, nor is there any information on the health of the resident corals. Given such knowledge deficiencies, 59 reefs across three Tongan archipelagos were surveyed herein, and pocilloporid corals were sampled from approximately half of these surveyed sites; 10 molecular-scale response variable were assessed in 88 of the sampled colonies, and 12 colonies were found to be outliers based on employment of a multivariate statistics-based aberrancy detection system. These outliers differed from the statistically normally behaving colonies in having not only higher RNA/DNA ratios but also elevated expression levels of three genes: 1) Symbiodinium zinc-induced facilitator-like 1-like, 2) host coral copper-zinc superoxide dismutase, and 3) host green fluorescent protein-like chromoprotein. Outliers were also characterized by significantly higher variation amongst the molecular response variables assessed, and the response variables that contributed most significantly to colonies being delineated as outliers differed between the two predominant reef coral species sampled, Pocillopora damicornis and P. acuta. These closely related species also displayed dissimilar temporal fluctuation patterns in their molecular physiologies, an observation that may have been driven by differences in their feeding strategies. Future works should attempt to determine whether corals displaying statistically aberrant molecular physiology, such as the 12 Tongan outliers identified herein, are indeed characterized by a diminished capacity for acclimating to the rapid changes in their abiotic milieu occurring as a result of global climate change.

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          Ubiquitin and ubiquitin-like proteins as multifunctional signals.

          Protein ubiquitylation is a recognized signal for protein degradation. However, it is increasingly realized that ubiquitin conjugation to proteins can be used for many other purposes. Furthermore, there are many ubiquitin-like proteins that control the activities of proteins. The central structural element of these post-translational modifications is the ubiquitin superfold. A common ancestor based on this superfold has evolved to give various proteins that are involved in diverse activities in the cell.
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            Conservation of coral reefs through active restoration measures: recent approaches and last decade progress.

            The scientific discipline of active restoration of denuded coral reef areas has drawn much attention in the past decade as it became evident that this ecosystem does not often recover naturally from anthropogenic stress without manipulation. Essentially, the choices are eitherthe continuous degradation of the reefs or active restoration to encourage reef development. As a result, worldwide restoration operations during the past decade have been recognized as being a major tool for reef rehabilitation. This situation has also stirred discussions and debates on the various restoration measures suggested as management options, supplementary to the traditional conservation acts. The present essay reviews past decade's (1994-2004) approaches and advances in coral reef restoration. While direct coral transplantation is still the primer vehicle of operations used, the concept of in situ and ex situ coral nurseries (the gardening concept), where coral materials (nubbins, branches, spats) are maricultured to a size suitable for transplantation, has been gaining recognition. The use of nubbins (down to the size of a single or few polyps) has been suggested and employed as a unique technique for mass production of coral colonies. Restoration of ship grounding sites and the use of artificial reefs have become common tools for specific restoration needs. Substrate stabilization, 3-D structural consideration of developing colonies, and the use of molecular/biochemical tools are part of novel technology approaches developed in the past decade. Economic considerations for reef restoration have become an important avenue for evaluating success of restoration activities. It has been suggested that landscape restoration and restoration genetics are important issues to be studied. In the future, as coral reef restoration may become the dominant conservation act, there would be the need not only to develop improved protocols but also to define the conceptual bases.
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              With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SoftwareRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Funding acquisitionRole: Project administrationRole: ResourcesRole: Supervision
                Role: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: ResourcesRole: VisualizationRole: Writing – original draft
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                1 November 2017
                2017
                : 12
                : 11
                : e0185857
                Affiliations
                [1 ] National Museum of Marine Biology and Aquarium, Checheng, Pingtung, Taiwan
                [2 ] Khaled bin Sultan Living Oceans Foundation, Annapolis, Maryland, United States of America
                [3 ] Taiwan Coral Research Center, Checheng, Pingtung, Taiwan
                [4 ] Graduate Institute of Marine Biotechnology, National Dong-Hwa University, Checheng, Pingtung, Taiwan
                [5 ] Department of Marine Biotechnology and Resources, National Sun Yat-Sen University, Kaohsiung, Taiwan
                National Taiwan Ocean University, TAIWAN
                Author notes

                Competing Interests: ACD is a paid employee of the Khaled bin Sultan Living Oceans Foundation, the funder of this research project. This does not alter our adherence to PLoS ONE policies on sharing data and materials, and all data have been made publically available without restriction.

                Author information
                http://orcid.org/0000-0003-0138-7844
                Article
                PONE-D-17-08065
                10.1371/journal.pone.0185857
                5665425
                29091723
                22e6d525-fa67-49da-9681-18861d720df4
                © 2017 Mayfield et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 28 February 2017
                : 20 September 2017
                Page count
                Figures: 6, Tables: 4, Pages: 28
                Funding
                Funded by: Khaled bin Sultan Living Oceans Foundation
                Award ID: postdoctoral research fellowship
                Award Recipient :
                This work was funded exclusively by the Khaled bin Sultan Living Oceans Foundation as part of their Global Reef Expedition. This included a postdoctoral research fellowship to ABM. The funder had no influence on the interpretation of the data, though one author (ACD) is an employee of the funding institution (a non-profit NGO).
                Categories
                Research Article
                Biology and Life Sciences
                Marine Biology
                Coral Reefs
                Earth Sciences
                Marine and Aquatic Sciences
                Marine Biology
                Coral Reefs
                Earth Sciences
                Marine and Aquatic Sciences
                Reefs
                Coral Reefs
                Biology and Life Sciences
                Marine Biology
                Corals
                Earth Sciences
                Marine and Aquatic Sciences
                Marine Biology
                Corals
                Biology and Life Sciences
                Genetics
                Gene Expression
                Biology and Life Sciences
                Ecology
                Ecophysiology
                Ecology and Environmental Sciences
                Ecology
                Ecophysiology
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Statistical Methods
                Analysis of Variance
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Methods
                Analysis of Variance
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Statistical Methods
                Multivariate Analysis
                Principal Component Analysis
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Methods
                Multivariate Analysis
                Principal Component Analysis
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Data
                Biology and Life Sciences
                Biochemistry
                Biomarkers
                Custom metadata
                As this represents the first in-depth survey of coral reefs of Tonga, detailed site descriptions have been provided for each archipelago in the S1 File. All images of the samples colonies, as well as their surrounding habitats, can be found on the following website: coralreefdiagnostics.com. At least one “macro” image of the polyps has been included for each colony on this same website. These images have also been uploaded to the Dryad repository at the following DOI: 10.5061/dryad.6vj6n. Maps of the surveyed reefs can be accessed freely on the following website: http://maps.lof.org/lof. Average live coral cover and other environmental data can be found in Tables 1 and 2 for Ha’apai and Vava’u, respectively, though for a more detailed treatise of the coral cover data, please see the S1 File. To peruse all environmental data, and not just those from the sites from which corals were collected, please see S1 data (an online, supplemental, tab-delineated spreadsheet). All physiological data can be found in the S1 data file, as well.

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