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      Evaluating the Relationship between Spermatogenic Silencing of the X Chromosome and Evolution of the Y Chromosome in Chimpanzee and Human

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          Abstract

          Chimpanzees and humans are genetically very similar, with the striking exception of their Y chromosomes, which have diverged tremendously. The male-specific region (MSY), representing the greater part of the Y chromosome, is inherited from father to son in a clonal fashion, with natural selection acting on the MSY as a unit. Positive selection might involve the performance of the MSY in spermatogenesis. Chimpanzees have a highly polygamous mating behavior, so that sperm competition is thought to provide a strong selective force acting on the Y chromosome in the chimpanzee lineage. In consequence of evolution of the heterologous sex chromosomes in mammals, meiotic sex chromosome inactivation (MSCI) results in a transcriptionally silenced XY body in male meiotic prophase, and subsequently also in postmeiotic repression of the sex chromosomes in haploid spermatids. This has evolved to a situation where MSCI has become a prerequisite for spermatogenesis. Here, by analysis of microarray testicular expression data representing a small number of male chimpanzees and men, we obtained information indicating that meiotic and postmeiotic X chromosome silencing might be more effective in chimpanzee than in human spermatogenesis. From this, we suggest that the remarkable reorganization of the chimpanzee Y chromosome, compared to the human Y chromosome, might have an impact on its meiotic interactions with the X chromosome and thereby on X chromosome silencing in spermatogenesis. Further studies will be required to address comparative functional aspects of MSCI in chimpanzee, human, and other placental mammals.

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          Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.

          The determination of the chimpanzee genome sequence provides a means to study both structural and functional aspects of the evolution of the human genome. Here we compare humans and chimpanzees with respect to differences in expression levels and protein-coding sequences for genes active in brain, heart, liver, kidney, and testis. We find that the patterns of differences in gene expression and gene sequences are markedly similar. In particular, there is a gradation of selective constraints among the tissues so that the brain shows the least differences between the species whereas liver shows the most. Furthermore, expression levels as well as amino acid sequences of genes active in more tissues have diverged less between the species than have genes active in fewer tissues. In general, these patterns are consistent with a model of neutral evolution with negative selection. However, for X-chromosomal genes expressed in testis, patterns suggestive of positive selection on sequence changes as well as expression changes are seen. Furthermore, although genes expressed in the brain have changed less than have genes expressed in other tissues, in agreement with previous work we find that genes active in brain have accumulated more changes on the human than on the chimpanzee lineage.
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            Evolution on the X chromosome: unusual patterns and processes.

            Although the X chromosome is usually similar to the autosomes in size and cytogenetic appearance, theoretical models predict that its hemizygosity in males may cause unusual patterns of evolution. The sequencing of several genomes has indeed revealed differences between the X chromosome and the autosomes in the rates of gene divergence, patterns of gene expression and rates of gene movement between chromosomes. A better understanding of these patterns should provide valuable information on the evolution of genes located on the X chromosome. It could also suggest solutions to more general problems in molecular evolution, such as detecting selection and estimating mutational effects on fitness.
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              An abundance of X-linked genes expressed in spermatogonia.

              Spermatogonia are the self-renewing, mitotic germ cells of the testis from which sperm arise by means of the differentiation pathway known as spermatogenesis. By contrast with hematopoietic and other mammalian stem-cell populations, which have been subjects of intense molecular genetic investigation, spermatogonia have remained largely unexplored at the molecular level. Here we describe a systematic search for genes expressed in mouse spermatogonia, but not in somatic tissues. We identified 25 genes (19 of which are novel) that are expressed in only male germ cells. Of the 25 genes, 3 are Y-linked and 10 are X-linked. If these genes had been distributed randomly in the genome, one would have expected zero to two of the genes to be X-linked. Our findings indicate that the X chromosome has a predominant role in pre-meiotic stages of mammalian spermatogenesis. We hypothesize that the X chromosome acquired this prominent role in male germ-cell development as it evolved from an ordinary, unspecialized autosome.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2010
                14 December 2010
                : 5
                : 12
                : e15598
                Affiliations
                [1]Department of Reproduction and Development, Erasmus MC - University Medical Center, Rotterdam, The Netherlands
                The Salk Institute, United States of America
                Author notes

                Conceived and designed the experiments: EMA JAG. Performed the experiments: EMA. Analyzed the data: EMA WMB JG JAG. Contributed reagents/materials/analysis tools: WMB JG. Wrote the paper: EMA JAG.

                Article
                PONE-D-10-01246
                10.1371/journal.pone.0015598
                3001880
                21179482
                233930a3-94cb-4168-8e2d-3a93e80cde29
                Mulugeta Achame et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 24 August 2010
                : 12 November 2010
                Page count
                Pages: 9
                Categories
                Research Article
                Biology
                Computational Biology
                Microarrays
                Developmental Biology
                Evolutionary Developmental Biology
                Evolutionary Biology
                Organismal Evolution
                Animal Evolution
                Comparative Genomics
                Genomic Evolution
                Genetics
                Animal Genetics
                Genomics
                Chromosome Biology
                Chromosome Structure and Function
                Meiosis
                X Chromosome Inactivation
                Comparative Genomics
                Genome Evolution
                Genome Expression Analysis
                Molecular Cell Biology
                Cellular Types
                Germ Cells
                Zoology
                Mammalogy
                Medicine
                Clinical Genetics
                Chromosomal Disorders
                X-Linked
                Y-Linked
                Urology
                Infertility
                Social and Behavioral Sciences
                Anthropology
                Biological Anthropology

                Uncategorized
                Uncategorized

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