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      Stress Responses of the Industrial Workhorse Bacillus licheniformis to Osmotic Challenges

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          Abstract

          The Gram-positive endospore-forming bacterium Bacillus licheniformis can be found widely in nature and it is exploited in industrial processes for the manufacturing of antibiotics, specialty chemicals, and enzymes. Both in its varied natural habitats and in industrial settings, B. licheniformis cells will be exposed to increases in the external osmolarity, conditions that trigger water efflux, impair turgor, cause the cessation of growth, and negatively affect the productivity of cell factories in biotechnological processes. We have taken here both systems-wide and targeted physiological approaches to unravel the core of the osmostress responses of B. licheniformis. Cells were suddenly subjected to an osmotic upshift of considerable magnitude (with 1 M NaCl), and their transcriptional profile was then recorded in a time-resolved fashion on a genome-wide scale. A bioinformatics cluster analysis was used to group the osmotically up-regulated genes into categories that are functionally associated with the synthesis and import of osmostress-relieving compounds (compatible solutes), the SigB-controlled general stress response, and genes whose functional annotation suggests that salt stress triggers secondary oxidative stress responses in B. licheniformis. The data set focusing on the transcriptional profile of B. licheniformis was enriched by proteomics aimed at identifying those proteins that were accumulated by the cells through increased biosynthesis in response to osmotic stress. Furthermore, these global approaches were augmented by a set of experiments that addressed the synthesis of the compatible solutes proline and glycine betaine and assessed the growth-enhancing effects of various osmoprotectants. Combined, our data provide a blueprint of the cellular adjustment processes of B. licheniformis to both sudden and sustained osmotic stress.

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          Developments in the use of Bacillus species for industrial production.

          Bacillus species continue to be dominant bacterial workhorses in microbial fermentations. Bacillus subtilis (natto) is the key microbial participant in the ongoing production of the soya-based traditional natto fermentation, and some Bacillus species are on the Food and Drug Administration's GRAS (generally regarded as safe) list. The capacity of selected Bacillus strains to produce and secrete large quantities (20-25 g/L) of extracellular enzymes has placed them among the most important industrial enzyme producers. The ability of different species to ferment in the acid, neutral, and alkaline pH ranges, combined with the presence of thermophiles in the genus, has lead to the development of a variety of new commercial enzyme products with the desired temperature, pH activity, and stability properties to address a variety of specific applications. Classical mutation and (or) selection techniques, together with advanced cloning and protein engineering strategies, have been exploited to develop these products. Efforts to produce and secrete high yields of foreign recombinant proteins in Bacillus hosts initially appeared to be hampered by the degradation of the products by the host proteases. Recent studies have revealed that the slow folding of heterologous proteins at the membrane-cell wall interface of Gram-positive bacteria renders them vulnerable to attack by wall-associated proteases. In addition, the presence of thiol-disulphide oxidoreductases in B. subtilis may be beneficial in the secretion of disulphide-bond-containing proteins. Such developments from our understanding of the complex protein translocation machinery of Gram-positive bacteria should allow the resolution of current secretion challenges and make Bacillus species preeminent hosts for heterologous protein production. Bacillus strains have also been developed and engineered as industrial producers of nucleotides, the vitamin riboflavin, the flavor agent ribose, and the supplement poly-gamma-glutamic acid. With the recent characterization of the genome of B. subtilis 168 and of some related strains, Bacillus species are poised to become the preferred hosts for the production of many new and improved products as we move through the genomic and proteomic era.
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            Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments.

            All microorganisms possess a positive turgor, and maintenance of this outward-directed pressure is essential since it is generally considered as the driving force for cell expansion. Exposure of microorganisms to high-osmolality environments triggers rapid fluxes of cell water along the osmotic gradient out of the cell, thus causing a reduction in turgor and dehydration of the cytoplasm. To counteract the outflow of water, microorganisms increase their intracellular solute pool by amassing large amounts of organic osmolytes, the so-called compatible solutes. These osmoprotectants are highly congruous with the physiology of the cell and comprise a limited number of substances including the disaccharide trehalose, the amino acid proline, and the trimethylammonium compound glycine betaine. The intracellular amassing of compatible solutes as an adaptive strategy to high-osmolality environments is evolutionarily well-conserved in Bacteria, Archaea, and Eukarya. Furthermore, the nature of the osmolytes that are accumulated during water stress is maintained across the kingdoms, reflecting fundamental constraints on the kind of solutes that are compatible with macromolecular and cellular functions. Generally, compatible solutes can be amassed by microorganisms through uptake and synthesis. Here we summarise the molecular mechanisms of compatible solute accumulation in Escherichia coli and Bacillus subtilis, model organisms for the gram-negative and gram-positive branches of bacteria.
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              Physiological and genetic responses of bacteria to osmotic stress.

              L N Csonka (1989)
              The capacity of organisms to respond to fluctuations in their osmotic environments is an important physiological process that determines their abilities to thrive in a variety of habitats. The primary response of bacteria to exposure to a high osmotic environment is the accumulation of certain solutes, K+, glutamate, trehalose, proline, and glycinebetaine, at concentrations that are proportional to the osmolarity of the medium. The supposed function of these solutes is to maintain the osmolarity of the cytoplasm at a value greater than the osmolarity of the medium and thus provide turgor pressure within the cells. Accumulation of these metabolites is accomplished by de novo synthesis or by uptake from the medium. Production of proteins that mediate accumulation or uptake of these metabolites is under osmotic control. This review is an account of the processes that mediate adaptation of bacteria to changes in their osmotic environment.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                15 November 2013
                10 December 2013
                : 8
                : 11
                : e80956
                Affiliations
                [1 ]Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Greifswald, Germany
                [2 ]Laboratory for Microbiology, Department of Biology, University Marburg, Marburg, Germany
                [3 ]LOEWE-Center for Synthetic Microbiology, University Marburg, Marburg, Germany
                [4 ]Institute for Microbiology, University of Greifswald, Greifswald, Germany
                [5 ]Institute of Biochemistry, University of Greifswald, Greifswald, Germany
                [6 ]Henkel AG & Co. KGaA, Düsseldorf, Germany
                [7 ]AB Enzymes GmbH, Darmstadt, Germany
                [8 ]CNRS UPR 9073 (Affiliated with Université Paris Diderot, Sorbonne Paris Cité), Institute de Biologie Physico-Chimique, Paris, France
                University of Oklahoma Health Sciences Center, United States of America
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                [¤]

                Current address: Boston Children’s Hospital, Center for Life Sciences, Boston, Massachusetts, United States of America

                [¤]

                Current address: Department of Chemistry and Biotechnology, Aachen University of Applied Sciences, Jülich, Germany

                Conceived and designed the experiments: ML KHM MH TS EB. Performed the experiments: RS TH BV HM MB JM BJ DA DB SE JB HP. Analyzed the data: RS TH BV HM MB JM BJ DA DB SE JB HP. Wrote the manuscript: TS EB.

                Article
                PONE-D-13-36758
                10.1371/journal.pone.0080956
                3858371
                24348917
                248dde8b-a513-4986-8a4b-5fdd72f4d3c5
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 7 October 2013
                : 8 October 2013
                Funding
                This study was financially supported by grants from the German Ministry of Education and Research via the Bacell-SysMo2 consortium (to ML, MH and EB) and the competence network “Genome Research in Bacteria” (to ML, MH, KHM and TS). Additional Funds were provided through the LOEWE program of the State of Hessen (via the Centre for Synthetic Microbiology; SynMicro, Marburg) (to EB), the Fonds der Chemischen Industrie (to EB) and the French National Centre for Scientific Research (UPR 9073), Université Paris VII-Denis Diderot (to HP). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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