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      mRNA Decapping and 5′-3′ Decay Contribute to the Regulation of ABA Signaling in Arabidopsis thaliana

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          Abstract

          Defects in RNA processing and degradation pathways often lead to developmental abnormalities, impaired hormonal signaling and altered resistance to abiotic and biotic stress. Here we report that components of the 5′-3′ mRNA decay pathway, DCP5, LSM1-7 and XRN4, contribute to a proper response to a key plant hormone abscisc acid (ABA), albeit in a different manner. Plants lacking DCP5 are more sensitive to ABA during germination, whereas lsm1a lsm1b and xrn4-5 mutants are affected at the early stages of vegetative growth. In addition, we show that DCP5 and LSM1 regulate mRNA stability and act in translational repression of the main components of the early ABA signaling, PYR/PYL ABA receptors and SnRK2s protein kinases. mRNA decapping DCP and LSM1-7 complexes also appear to modulate ABA-dependent expression of stress related transcription factors from the AP2/ERF/DREB family that in turn affect the level of genes regulated by the PYL/PYR/RCAR-PP2C-SnRK2 pathway. These observations suggest that ABA signaling through PYL/PYR/RCAR receptors and SnRK2s kinases is regulated directly and indirectly by the cytoplasmic mRNA decay pathway.

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          Most cited references45

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          ABA-mediated transcriptional regulation in response to osmotic stress in plants.

          The plant hormone abscisic acid (ABA) plays a pivotal role in a variety of developmental processes and adaptive stress responses to environmental stimuli in plants. Cellular dehydration during the seed maturation and vegetative growth stages induces an increase in endogenous ABA levels, which control many dehydration-responsive genes. In Arabidopsis plants, ABA regulates nearly 10% of the protein-coding genes, a much higher percentage than other plant hormones. Expression of the genes is mainly regulated by two different families of bZIP transcription factors (TFs), ABI5 in the seeds and AREB/ABFs in the vegetative stage, in an ABA-responsive-element (ABRE) dependent manner. The SnRK2-AREB/ABF pathway governs the majority of ABA-mediated ABRE-dependent gene expression in response to osmotic stress during the vegetative stage. In addition to osmotic stress, the circadian clock and light conditions also appear to participate in the regulation of ABA-mediated gene expression, likely conferring versatile tolerance and repressing growth under stress conditions. Moreover, various other TFs belonging to several classes, including AP2/ERF, MYB, NAC, and HD-ZF, have been reported to engage in ABA-mediated gene expression. This review mainly focuses on the transcriptional regulation of ABA-mediated gene expression in response to osmotic stress during the vegetative growth stage in Arabidopsis.
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            ABA-dependent and ABA-independent signaling in response to osmotic stress in plants.

            Plants have adaptive robustness to osmotic stresses such as drought and high salinity. Numerous genes functioning in stress response and tolerance are induced under osmotic conditions in diverse plants. Various signaling proteins, such as transcription factors, protein kinases and phosphatases, play signal transduction roles during plant adaptation to osmotic stress, with involvement ranging from stress signal perception to stress-responsive gene expression. Recent progress has been made in analyzing the complex cascades of gene expression during osmotic stress response, and especially in identifying specificity and crosstalk in abscisic acid (ABA)-dependent and ABA-independent signaling pathways. In this review, we highlight transcriptional regulation of gene expression governed by two key transcription factors: AREB/ABFs and DREB2A operating respectively in ABA-dependent and ABA-independent signaling pathways. Copyright © 2014 Elsevier Ltd. All rights reserved.
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              Abscisic Acid synthesis and response.

              Abscisic acid (ABA) is one of the "classical" plant hormones, i.e. discovered at least 50 years ago, that regulates many aspects of plant growth and development. This chapter reviews our current understanding of ABA synthesis, metabolism, transport, and signal transduction, emphasizing knowledge gained from studies of Arabidopsis. A combination of genetic, molecular and biochemical studies has identified nearly all of the enzymes involved in ABA metabolism, almost 200 loci regulating ABA response, and thousands of genes regulated by ABA in various contexts. Some of these regulators are implicated in cross-talk with other developmental, environmental or hormonal signals. Specific details of the ABA signaling mechanisms vary among tissues or developmental stages; these are discussed in the context of ABA effects on seed maturation, germination, seedling growth, vegetative stress responses, stomatal regulation, pathogen response, flowering, and senescence.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                12 March 2018
                2018
                : 9
                : 312
                Affiliations
                [1] 1Faculty of Biology, Institute of Genetics and Biotechnology, University of Warsaw , Warsaw, Poland
                [2] 2Institute of Biochemistry and Biophysics Polish Academy of Sciences , Warsaw, Poland
                Author notes

                Edited by: Viswanathan Chinnusamy, Indian Agricultural Research Institute (IARI), India

                Reviewed by: Yang Zhao, Shanghai Institutes for Biological Sciences (CAS), China; Taishi Umezawa, Tokyo University of Agriculture and Technology, Japan

                *Correspondence: Izabela Wawer izabela@ 123456ibb.waw.pl

                This article was submitted to Plant Abiotic Stress, a section of the journal Frontiers in Plant Science

                †Present Address: Dorota Kawa, Department of Plant Biology and Genome Center, University of California, Davis, Davis, CA, United States

                Article
                10.3389/fpls.2018.00312
                5857609
                29593767
                252890e1-9a0b-4bf4-aade-1cb49cd513fd
                Copyright © 2018 Wawer, Golisz, Sulkowska, Kawa, Kulik and Kufel.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 22 August 2017
                : 23 February 2018
                Page count
                Figures: 5, Tables: 0, Equations: 2, References: 53, Pages: 12, Words: 8032
                Funding
                Funded by: Fundacja na rzecz Nauki Polskiej 10.13039/501100001870
                Funded by: Narodowe Centrum Nauki 10.13039/501100004281
                Funded by: European Regional Development Fund 10.13039/501100008530
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                abscisic acid,decapping,mrna decay,arabidopsis thaliana,snrk2,aba,aba receptors
                Plant science & Botany
                abscisic acid, decapping, mrna decay, arabidopsis thaliana, snrk2, aba, aba receptors

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