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      Association and synergistic interaction between promoter variants of the DRD4 gene in Japanese schizophrenics

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          Abstract

          Recent association studies suggest that polymorphisms in the promoter and exon 1 upstream region of the dopamine D4 receptor ( DRD4) gene play a functional role in the development of common psychiatric illnesses, although there are also conflicting results. In this study, we re-sequenced this region to identify all genomic variants, and tested them for association with schizophrenia. A total of 570 Japanese schizophrenic cases with matched controls were studied by genotyping all identified/validated common polymorphisms (−1106T>C, −906T>C, −809G>A, −616G>C, −521T>C, −376C>T, −291C>T and 12-bp repeat) and a known microsatellite (120-bp tandem duplication) in the upstream region. A single nucleotide polymorphism (SNP) −809G>A in the promoter region was found to be significantly associated with disease ( P=0.018 and 0.032 for allelic and genotypic comparisons, respectively), although not surviving after Bonferroni correction. Logistic regression analysis showed that a combination of the four polymorphisms, −809G>A, −616G>C, −291C>T and the 12-bp repeat, conferred a susceptibility to schizophrenia. These results suggest that the upstream variants have a primary functional effect in the etiology of schizophrenia in the Japanese population.

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          Dopamine D4 receptor (D4DR) exon III polymorphism associated with the human personality trait of Novelty Seeking.

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            Pedigree disequilibrium tests for multilocus haplotypes.

            Association tests of multilocus haplotypes are of interest both in linkage disequilibrium mapping and in candidate gene studies. For case-parent trios, I discuss the extension of existing multilocus methods to include ambiguous haplotypes in tests of models which distinguish between the cis and trans phase. A likelihood-ratio test is proposed, using the expectation-maximization (E-M) algorithm to account for haplotype ambiguities. Assumptions about the population structure are required, but realistic situations, including population stratification, which violate the assumptions lead to conservative tests. I describe a permutation procedure for the null hypothesis of interest, which controls for violation of the assumptions. For general pedigrees, I describe extensions of the pedigree disequilibrium test to include uncertain haplotypes. The summary statistics are replaced by their expected values over prior distributions of haplotype frequencies. If prior distributions are not available, a valid test is possible by using the E-M algorithm to estimate the null distribution of haplotype frequencies. Similar methods are available for quantitative traits. Exact permutation tests are difficult to construct in small samples, but an approximate procedure is appropriate in large samples, and can be used to account for dependencies between tests of multiple haplotypes and loci. Copyright 2003 Wiley-Liss, Inc.
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              Population and familial association between the D4 dopamine receptor gene and measures of Novelty Seeking.

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                Author and article information

                Contributors
                +81-48-4675968 , +81-48-4677462 , takeo@brain.riken.jp
                Journal
                J Hum Genet
                Journal of Human Genetics
                Springer-Verlag (Tokyo )
                1434-5161
                1435-232X
                7 November 2006
                January 2007
                : 52
                : 1
                : 86-91
                Affiliations
                [1 ]Laboratory for Molecular Psychiatry, RIKEN Brain Science Institute, 2-1 Hirosawa, Wako-city, Saitama 351-0198 Japan
                [2 ]Department of Paediatrics, Tokyo Medical University, Shinjuku, Tokyo, 160-0023 Japan
                [3 ]Department of Psychiatry and Neurology, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka 431-3192 Japan
                [4 ]Division of Clinical Neuroscience, Chiba University, Center for Forensic Mental Health, Chiba, 260-8670 Japan
                [5 ]Department of Psychiatry, Chiba University, Graduate School of Medicine, Chiba, Japan
                [6 ]CREST, Japan Science and Technology Agency, Saitama, Japan
                Article
                84
                10.1007/s10038-006-0084-3
                1705471
                17089069
                26f6eaa3-b31a-4ad4-bd67-7ad2774e75cf
                © The Japan Society of Human Genetics and Springer 2006
                History
                : 19 September 2006
                : 16 October 2006
                Categories
                Original Article
                Custom metadata
                © The Japan Society of Human Genetics and Springer 2006

                Genetics
                haplotype block,linkage disequilibrium,dopamine d4 receptor,promoter region,re-sequencing,logistic regression analysis

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