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      The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies.

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          Abstract

          The semantic measures library and toolkit are robust open-source and easy to use software solutions dedicated to semantic measures. They can be used for large-scale computations and analyses of semantic similarities between terms/concepts defined in terminologies and ontologies. The comparison of entities (e.g. genes) annotated by concepts is also supported. A large collection of measures is available. Not limited to a specific application context, the library and the toolkit can be used with various controlled vocabularies and ontology specifications (e.g. Open Biomedical Ontology, Resource Description Framework). The project targets both designers and practitioners of semantic measures providing a JAVA library, as well as a command-line tool that can be used on personal computers or computer clusters.

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          Author and article information

          Journal
          Bioinformatics
          Bioinformatics (Oxford, England)
          1367-4811
          1367-4803
          Mar 1 2014
          : 30
          : 5
          Affiliations
          [1 ] LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 Nîmes cedex 1, France.
          Article
          btt581
          10.1093/bioinformatics/btt581
          24108186
          270f60c3-120d-4dad-81fe-c93bd80165fa
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