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      Increased serum piwi-interacting RNAs as a novel potential diagnostic tool for brucellosis

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          Abstract

          Background

          Piwi-interacting RNAs (piRNAs) have emerged as potential novel indicators for various diseases; however, their diagnostic value for brucellosis remains unclear. This study aimed to evaluate the diagnostic potential of altered serum piRNAs in patients with brucellosis.

          Methods

          Illumina sequencing via synthesis (SBS) technology was used to screen the serum piRNA profile in brucellosis patients, and markedly dysregulated piRNAs were confirmed by quantitative real-time polymerase chain reaction (qRT-PCR) assay in two sets from a cohort of 73 brucellosis patients and 65 controls.

          Results

          Illumina SBS technology results showed that seven piRNAs were markedly elevated in brucellosis patients compared to normal controls. The seven upregulated piRNAs were further validated individually by qRT-PCR, of which three piRNAs (piR-000753, piR-001312, and piR-016742) were confirmed to be significantly and steadily increased in the patients (> 2-fold, P < 0.01). The area under the receiver operating characteristic (ROC) curve (AUCs) for the three piRNAs ranged from 0.698 to 0.783. The AUC for the three piRNAs combination was 0.772, with a specificity of 86% and a positive predictive value of 90%, respectively.

          Conclusions

          The three-piRNA panel identified in this study has potential as a novel blood-based auxiliary tool for brucellosis detection.

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          Most cited references50

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          Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases.

          Dysregulated expression of microRNAs (miRNAs) in various tissues has been associated with a variety of diseases, including cancers. Here we demonstrate that miRNAs are present in the serum and plasma of humans and other animals such as mice, rats, bovine fetuses, calves, and horses. The levels of miRNAs in serum are stable, reproducible, and consistent among individuals of the same species. Employing Solexa, we sequenced all serum miRNAs of healthy Chinese subjects and found over 100 and 91 serum miRNAs in male and female subjects, respectively. We also identified specific expression patterns of serum miRNAs for lung cancer, colorectal cancer, and diabetes, providing evidence that serum miRNAs contain fingerprints for various diseases. Two non-small cell lung cancer-specific serum miRNAs obtained by Solexa were further validated in an independent trial of 75 healthy donors and 152 cancer patients, using quantitative reverse transcription polymerase chain reaction assays. Through these analyses, we conclude that serum miRNAs can serve as potential biomarkers for the detection of various cancers and other diseases.
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            Human brucellosis.

            Human brucellosis still presents scientists and clinicians with several challenges, such as the understanding of pathogenic mechanisms of Brucella spp, the identification of markers for disease severity, progression, and treatment response, and the development of improved treatment regimens. Molecular studies have shed new light on the pathogenesis of Brucella spp, and new technologies have permitted the development of diagnostic tools that will be useful in developing countries, where brucellosis is still a very common but often neglected disease. However, further studies are needed to establish optimum treatment regimens and local and international control programmes. This Review summarises current knowledge of the pathogenic mechanisms, new diagnostic advances, therapeutic options, and the situation of developing countries in regard to human brucellosis.
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              Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues.

              Proper normalization is a critical but often an underappreciated aspect of quantitative gene expression analysis. This study describes the identification and characterization of appropriate reference RNA targets for the normalization of microRNA (miRNA) quantitative RT-PCR data. miRNA microarray data from dozens of normal and disease human tissues revealed ubiquitous and stably expressed normalization candidates for evaluation by qRT-PCR. miR-191 and miR-103, among others, were found to be highly consistent in their expression across 13 normal tissues and five pair of distinct tumor/normal adjacent tissues. These miRNAs were statistically superior to the most commonly used reference RNAs used in miRNA qRT-PCR experiments, such as 5S rRNA, U6 snRNA, or total RNA. The most stable normalizers were also highly conserved across flash-frozen and formalin-fixed paraffin-embedded lung cancer tumor/NAT sample sets, resulting in the confirmation of one well-documented oncomir (let-7a), as well as the identification of novel oncomirs. These findings constitute the first report describing the rigorous normalization of miRNA qRT-PCR data and have important implications for proper experimental design and accurate data interpretation.
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                Author and article information

                Contributors
                Journal
                Front Cell Infect Microbiol
                Front Cell Infect Microbiol
                Front. Cell. Infect. Microbiol.
                Frontiers in Cellular and Infection Microbiology
                Frontiers Media S.A.
                2235-2988
                15 September 2022
                2022
                : 12
                : 992775
                Affiliations
                [1] 1 Department of Clinical Laboratory, Jinling Hospital, State Key Laboratory of Analytical Chemistry for Life Science, NJU Advanced Institute for Life Sciences (NAILS), School of Life Sciences, Nanjing University , Nanjing, China
                [2] 2 Nanjing Drum Tower Hospital Center of Molecular Diagnostic and Therapy, Chinese Academy of Medical Sciences Research Unit of Extracellular RNA, State Key Laboratory of Pharmaceutical Biotechnology, Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, NJU Advanced Institute of Life Sciences (NAILS), Institute of Artificial Intelligence Biomedicine, School of Life Sciences, Nanjing University , Nanjing, China
                [3] 3 Department of Prenatal Diagnosis, Women’s Hospital of Nanjing Medical University, Nanjing Maternity and Child Health Care Hospital , Nanjing, China
                [4] 4 Department of Microbiology, Harbin Medical University , Harbin, China
                [5] 5 Department of Clinical Laboratory, Affiliated Hospital of Inner Mongolia Medical University , Hohhot, China
                Author notes

                Edited by: Léanie Kleynhans, Stellenbosch University, South Africa

                Reviewed by: Assunta Sellitto, University of Salerno, Italy; Yu H. Sun, University of Rochester, United States

                *Correspondence: Jun-Jun Wang, wangjunjun9202@ 123456163.com ; Chunni Zhang, zchunni27@ 123456hotmail.com ; Chen-Yu Zhang, cyzhang@ 123456nju.edu.cn

                †These authors have contributed equally to this work

                This article was submitted to Clinical Microbiology, a section of the journal Frontiers in Cellular and Infection Microbiology

                Article
                10.3389/fcimb.2022.992775
                9519857
                27c304e2-bf39-4cae-b715-8d9a87bf1f34
                Copyright © 2022 Wang, Zhang, Fu, Zhang, Ding, Zhou, Chen, Zhang, Zhang, Zhang and Wang

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 July 2022
                : 29 August 2022
                Page count
                Figures: 2, Tables: 3, Equations: 0, References: 50, Pages: 10, Words: 4817
                Funding
                Funded by: National Natural Science Foundation of China , doi 10.13039/501100001809;
                Award ID: 81772282 and 82072376
                Funded by: State Key Laboratory of Analytical Chemistry for Life Sciences , doi 10.13039/501100011244;
                Award ID: 5431ZZXM1907
                Funded by: Natural Science Foundation of Jiangsu Province , doi 10.13039/501100004608;
                Award ID: BK20211132
                Funded by: Postdoctoral Science Foundation of Jiangsu Province , doi 10.13039/501100010246;
                Award ID: 2021K322C
                Categories
                Cellular and Infection Microbiology
                Original Research

                Infectious disease & Microbiology
                pirna,serum,brucellosis,biomarker,qrt-pcr
                Infectious disease & Microbiology
                pirna, serum, brucellosis, biomarker, qrt-pcr

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