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      Quantifying the Stability of the Hydronium Ion in Organic Solvents With Molecular Dynamics Simulations

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          Abstract

          The solution-phase stability of the hydronium ion catalyst significantly affects the rates of acid-catalyzed reactions, which are ubiquitously utilized to convert biomass to valuable chemicals. In this work, classical molecular dynamics simulations were performed to quantify the stability of hydronium and chloride ions by measuring their solvation free energies in water, 1,4-dioxane (DIOX), tetrahydrofuran (THF), γ-valerolactone (GVL), N-methyl-2-pyrrolidone (NMP), acetone (ACE), and dimethyl sulfoxide (DMSO). By measuring the free energy for transferring a hydronium ion from pure water to pure organic solvent, we found that the hydronium ion is destabilized in DIOX, THF, and GVL and stabilized in NMP, ACE, and DMSO relative to water. The distinction between these organic solvents can be used to predict the preference of the hydronium ion for specific regions in aqueous mixtures of organic solvents. We then incorporated the stability of the hydronium ion into a correlative model for the acid-catalyzed conversion of 1,2-propanediol to propanal. The revised model is able to predict experimental reaction rates across solvent systems with different organic solvents. These results demonstrate the ability of classical molecular dynamics simulations to screen solvent systems for improved acid-catalyzed reaction performance.

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          Most cited references59

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          Synthesis of transportation fuels from biomass: chemistry, catalysts, and engineering.

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            Liquid-Phase Catalytic Processing of Biomass-Derived Oxygenated Hydrocarbons to Fuels and Chemicals

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              Prediction of Absolute Solvation Free Energies using Molecular Dynamics Free Energy Perturbation and the OPLS Force Field.

              The accurate prediction of protein-ligand binding free energies is a primary objective in computer-aided drug design. The solvation free energy of a small molecule provides a surrogate to the desolvation of the ligand in the thermodynamic process of protein-ligand binding. Here, we use explicit solvent molecular dynamics free energy perturbation to predict the absolute solvation free energies of a set of 239 small molecules, spanning diverse chemical functional groups commonly found in drugs and drug-like molecules. We also compare the performance of absolute solvation free energies obtained using the OPLS_2005 force field with two other commonly used small molecule force fields-general AMBER force field (GAFF) with AM1-BCC charges and CHARMm-MSI with CHelpG charges. Using the OPLS_2005 force field, we obtain high correlation with experimental solvation free energies (R(2) = 0.94) and low average unsigned errors for a majority of the functional groups compared to AM1-BCC/GAFF or CHelpG/CHARMm-MSI. However, OPLS_2005 has errors of over 1.3 kcal/mol for certain classes of polar compounds. We show that predictions on these compound classes can be improved by using a semiempirical charge assignment method with an implicit bond charge correction.
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                Author and article information

                Contributors
                Journal
                Front Chem
                Front Chem
                Front. Chem.
                Frontiers in Chemistry
                Frontiers Media S.A.
                2296-2646
                19 June 2019
                2019
                : 7
                : 439
                Affiliations
                Department of Chemical and Biological Engineering, University of Wisconsin – Madison , Madison, WI, United States
                Author notes

                Edited by: Moisés Canle, University of A Coruña, Spain

                Reviewed by: Valerije Vrcek, University of Zagreb, Croatia; Arturo Santaballa, University of A Coruña, Spain

                *Correspondence: Reid C. Van Lehn vanlehn@ 123456wisc.edu

                This article was submitted to Green and Sustainable Chemistry, a section of the journal Frontiers in Chemistry

                Article
                10.3389/fchem.2019.00439
                6594219
                27f4a776-4d2f-4ead-8860-99238cd5baee
                Copyright © 2019 Chew and Van Lehn.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 February 2019
                : 28 May 2019
                Page count
                Figures: 7, Tables: 1, Equations: 9, References: 73, Pages: 14, Words: 10472
                Categories
                Chemistry
                Original Research

                acid-catalyzed reactions,solvent effects,biomass conversion,hydronium ion,classical molecular dynamics simulation,solvation free energy

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