30
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      The Generation and Exploitation of Protein Mutability Landscapes for Enzyme Engineering

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The increasing number of enzyme applications in chemical synthesis calls for new engineering methods to develop the biocatalysts of the future. An interesting concept in enzyme engineering is the generation of large‐scale mutational data in order to chart protein mutability landscapes. These landscapes allow the important discrimination between beneficial mutations and those that are neutral or detrimental, thus providing detailed insight into sequence–function relationships. As such, mutability landscapes are a powerful tool with which to identify functional hotspots at any place in the amino acid sequence of an enzyme. These hotspots can be used as targets for combinatorial mutagenesis to yield superior enzymes with improved catalytic properties, stability, or even new enzymatic activities. The generation of mutability landscapes for multiple properties of one enzyme provides the exciting opportunity to select mutations that are beneficial either for one or for several of these properties. This review presents an overview of the recent advances in the construction of mutability landscapes and discusses their importance for enzyme engineering.

          Related collections

          Most cited references27

          • Record: found
          • Abstract: found
          • Article: not found

          Deep mutational scanning: a new style of protein science.

          Mutagenesis provides insight into proteins, but only recently have assays that couple genotype to phenotype been used to assess the activities of as many as 1 million mutant versions of a protein in a single experiment. This approach-'deep mutational scanning'-yields large-scale data sets that can reveal intrinsic protein properties, protein behavior within cells and the consequences of human genetic variation. Deep mutational scanning is transforming the study of proteins, but many challenges must be tackled for it to fulfill its promise.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Enzyme immobilization: an update.

            Compared to free enzymes in solution, immobilized enzymes are more robust and more resistant to environmental changes. More importantly, the heterogeneity of the immo-bilized enzyme systems allows an easy recovery of both enzymes and products, multiple re-use of enzymes, continuous operation of enzymatic processes, rapid termination of reactions, and greater variety of bioreactor designs. This paper is a review of the recent literatures on enzyme immobilization by various techniques, the need for immobilization and different applications in industry, covering the last two decades. The most recent papers, patents, and reviews on immobilization strategies and application are reviewed.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Directed evolution drives the next generation of biocatalysts.

              Enzymes are increasingly being used as biocatalysts in the generation of products that have until now been derived using traditional chemical processes. Such products range from pharmaceutical and agrochemical building blocks to fine and bulk chemicals and, more recently, components of biofuels. For a biocatalyst to be effective in an industrial process, it must be subjected to improvement and optimization, and in this respect the directed evolution of enzymes has emerged as a powerful enabling technology. Directed evolution involves repeated rounds of (i) random gene library generation, (ii) expression of genes in a suitable host and (iii) screening of libraries of variant enzymes for the property of interest. Both in vitro screening-based methods and in vivo selection-based methods have been applied to the evolution of enzyme function and properties. Significant developments have occurred recently, particularly with respect to library design, screening methodology, applications in synthetic transformations and strategies for the generation of new enzyme function.
                Bookmark

                Author and article information

                Contributors
                g.j.poelarends@rug.nl
                Journal
                Chembiochem
                Chembiochem
                10.1002/(ISSN)1439-7633
                CBIC
                Chembiochem
                John Wiley and Sons Inc. (Hoboken )
                1439-4227
                1439-7633
                19 August 2016
                04 October 2016
                : 17
                : 19 ( doiID: 10.1002/cbic.v17.19 )
                : 1792-1799
                Affiliations
                [ 1 ] Department of Chemical and Pharmaceutical Biology Groningen Research Institute of PharmacyUniversity of Groningen Antonius Deusinglaan 1 9713 AV GroningenThe Netherlands
                Article
                CBIC201600382
                10.1002/cbic.201600382
                5095810
                27441919
                2882b245-05b5-4cb7-b7d3-4a0673344298
                © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

                This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 07 July 2016
                Page count
                Figures: 6, Tables: 1, References: 48, Pages: 8, Words: 0
                Categories
                Minireview
                Minireviews
                Custom metadata
                2.0
                cbic201600382
                October 4, 2016
                Converter:WILEY_ML3GV2_TO_NLMPMC version:4.9.6 mode:remove_FC converted:04.11.2016

                Biochemistry
                biocatalysis,enzyme engineering,hotspots,mutability landscapes,mutagenesis
                Biochemistry
                biocatalysis, enzyme engineering, hotspots, mutability landscapes, mutagenesis

                Comments

                Comment on this article